Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq4884 408 2e-110 seq4415 374 3e-100 >seq4884 Length=693 Score = 408 bits (452), Expect = 2e-110 Identities = 497/676 (74%), Gaps = 6/676 (1%) Strand=Plus/Plus Query 3140 TTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTG 3199 |||||||||| | || ||||| ||||| |||||||||||||| ||||| ||| | | Sbjct 19 TTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGG 78 Query 3200 ATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGG 3259 | || ||||| ||| | |||||||| || |||||||||| | |||||||| |||| | Sbjct 79 ACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTG 138 Query 3260 TTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGT 3319 | || |||| || || || | || |||||||| |||||||| || ||||||||| ||| Sbjct 139 TAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGT 198 Query 3320 TTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGG 3379 | ||| |||||||||||||| ||||| || |||||| | | | ||| | Sbjct 199 TCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTG 258 Query 3380 ACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTT 3436 ||||||| | || | | || || ||| |||| | ||||| || |||||| || Sbjct 259 ACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAA---AATCCCTAAGCATT 315 Query 3437 TGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGC 3496 || |||| | ||| |||| || || || |||||||| || |||||||||||||| | Sbjct 316 TGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACC 375 Query 3497 GTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCT 3556 |||||||||| ||||| | | |||||| | ||||||||||||||| | |||||||||| Sbjct 376 GTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 435 Query 3557 GCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAA 3616 |||| || ||||| |||||| |||||||||| ||||| || || | | || ||| Sbjct 436 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 495 Query 3617 TGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTC 3676 || | | | || || ||||| ||||||||| ||||||| |||||||| | | | Sbjct 496 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 555 Query 3677 ACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTG 3736 | ||||| || || ||| |||||| ||||||||||||| ||||||||| || |||| Sbjct 556 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 615 Query 3737 GCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCT 3796 | ||| |||||| ||||| || || ||||| || || ||||| |||| | | | ||| Sbjct 616 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 675 Query 3797 GGGCTTCCGGTTACGA 3812 |||| || || || || Sbjct 676 GGGCATCTGGCTATGA 691 >seq4415 Length=843 Score = 374 bits (414), Expect = 3e-100 Identities = 321/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 229 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 288 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 289 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 348 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 349 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 408 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 409 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 468 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 469 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 528 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 529 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 588 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 589 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361965741224