Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq4415 343 5e-91 seq4884 262 1e-66 >seq4415 Length=843 Score = 343 bits (380), Expect = 5e-91 Identities = 457/626 (73%), Gaps = 13/626 (2%) Strand=Plus/Plus Query 1816 GACGAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAA 1875 || |||||||| | | |||||| | || | || ||||||||||||| | || || Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64 Query 1876 GAACATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTA 1935 |||||| || ||||||| | | || | ||||||| | ||||| ||||| || || Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124 Query 1936 TCCACATCGTCAACTGACACAAACCACAAA--GGAAACTGAAATGTCTAAATCAA---AC 1990 || || ||| |||||| || || || ||||| | | |||| || Sbjct 125 TCTGAGTCCGATGCTGTTC--AACCACTAATAGGTAA--GAAATCA-TGAGTCAAGTTAC 179 Query 1991 -GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTC 2049 ||| | ||| || || || ||| | || ||||| || || ||||| || ||| | Sbjct 180 TGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGC 239 Query 2050 TGTTCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGC 2109 ||| | || || || || || ||||| || || | || | || || |||||||| Sbjct 240 CGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGC 299 Query 2110 TACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACT 2168 ||| ||||| || || ||||| || ||| | ||||||||||| ||||| || ||||||| Sbjct 300 TACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACT 358 Query 2169 TTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATT 2228 |||| || || |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 359 TTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATT 418 Query 2229 ACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCG 2288 | ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | Sbjct 419 ATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGG 478 Query 2289 AAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTC 2348 ||||||| | ||||| || || || || ||||||||| ||||| ||||||| || || Sbjct 479 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 538 Query 2349 TTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAAC 2408 | | ||| ||||| ||||||| || || | | |||| ||| |||| | ||| || Sbjct 539 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAA 598 Query 2409 AGTTACGCGCTCAAGGTGTCATGTAA 2434 | ||||| || |||| || |||||| Sbjct 599 AATTACGTGCAGAAGGAGTGATGTAA 624 >seq4884 Length=693 Score = 262 bits (290), Expect = 1e-66 Identities = 477/693 (69%), Gaps = 20/693 (3%) Strand=Plus/Plus Query 2663 GCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCT 2722 |||||| | ||||| || || | || || || || || | | ||||| ||||| Sbjct 9 GCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCC 68 Query 2723 TTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTT 2782 |||||| || ||||||||| | ||||| || || | ||||||||||| ||| || Sbjct 69 TTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATT 128 Query 2783 GACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAG 2842 ||||| || || || ||| |||| ||| |||| || ||||| | || ||| | ||| Sbjct 129 GACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAG 188 Query 2843 TGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCC 2902 |||||||| || ||||||||||| ||||||||| | ||||| || |||||| | | Sbjct 189 TGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACACT 245 Query 2903 TCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTG 2959 |||||| ||| ||| |||| ||| || || ||| || |||| |||| | Sbjct 246 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATC 305 Query 2960 CCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGG 3019 ||||| || |||||| ||| ||||||| ||||| ||||| || ||| |||| || Sbjct 306 CCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG- 364 Query 3020 TCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTATAA 3072 |||| || | | ||| ||||||| | ||| || | || || ||| | Sbjct 365 ---GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCG 418 Query 3073 ATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATAC 3132 | || | ||| | | || ||| || |||||||| || ||||| || || || Sbjct 419 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 478 Query 3133 TCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGC 3192 | ||| | ||||| ||| ||| | |||||||||||||||| || ||||| Sbjct 479 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 538 Query 3193 CGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGA 3252 || || ||||| || ||||| || || |||||||||||||||||| ||||||| ||| Sbjct 539 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 598 Query 3253 CATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCT 3312 |||| || || ||| | || || ||||| | |||||| |||||| | || | Sbjct 599 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 658 Query 3313 CATGCGCTCTGAATTTTGGGCATCTGGCTATGA 3345 |||||||||| | | ||||||||||||||||| Sbjct 659 CATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733300965980