Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_001420.2
Length=5577
Score E
Sequences producing significant alignments: (Bits) Value
seq4415 343 5e-91
seq4884 262 1e-66
>seq4415
Length=843
Score = 343 bits (380), Expect = 5e-91
Identities = 457/626 (73%), Gaps = 13/626 (2%)
Strand=Plus/Plus
Query 1816 GACGAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAA 1875
|| |||||||| | | |||||| | || | || ||||||||||||| | || ||
Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64
Query 1876 GAACATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTA 1935
|||||| || ||||||| | | || | ||||||| | ||||| ||||| || ||
Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124
Query 1936 TCCACATCGTCAACTGACACAAACCACAAA--GGAAACTGAAATGTCTAAATCAA---AC 1990
|| || ||| |||||| || || || ||||| | | |||| ||
Sbjct 125 TCTGAGTCCGATGCTGTTC--AACCACTAATAGGTAA--GAAATCA-TGAGTCAAGTTAC 179
Query 1991 -GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTC 2049
||| | ||| || || || ||| | || ||||| || || ||||| || ||| |
Sbjct 180 TGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGC 239
Query 2050 TGTTCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGC 2109
||| | || || || || || ||||| || || | || | || || ||||||||
Sbjct 240 CGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGC 299
Query 2110 TACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACT 2168
||| ||||| || || ||||| || ||| | ||||||||||| ||||| || |||||||
Sbjct 300 TACTGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACT 358
Query 2169 TTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATT 2228
|||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATT 418
Query 2229 ACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCG 2288
| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 419 ATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGG 478
Query 2289 AAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTC 2348
||||||| | ||||| || || || || ||||||||| ||||| ||||||| || ||
Sbjct 479 AAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCT 538
Query 2349 TTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAAC 2408
| | ||| ||||| ||||||| || || | | |||| ||| |||| | ||| ||
Sbjct 539 TGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAA 598
Query 2409 AGTTACGCGCTCAAGGTGTCATGTAA 2434
| ||||| || |||| || ||||||
Sbjct 599 AATTACGTGCAGAAGGAGTGATGTAA 624
>seq4884
Length=693
Score = 262 bits (290), Expect = 1e-66
Identities = 477/693 (69%), Gaps = 20/693 (3%)
Strand=Plus/Plus
Query 2663 GCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCT 2722
|||||| | ||||| || || | || || || || || | | ||||| |||||
Sbjct 9 GCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCC 68
Query 2723 TTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTT 2782
|||||| || ||||||||| | ||||| || || | ||||||||||| ||| ||
Sbjct 69 TTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATT 128
Query 2783 GACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAG 2842
||||| || || || ||| |||| ||| |||| || ||||| | || ||| | |||
Sbjct 129 GACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAG 188
Query 2843 TGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCC 2902
|||||||| || ||||||||||| ||||||||| | ||||| || |||||| | |
Sbjct 189 TGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA---ACACT 245
Query 2903 TCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTG 2959
|||||| ||| ||| |||| ||| || || ||| || |||| |||| |
Sbjct 246 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATC 305
Query 2960 CCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGG 3019
||||| || |||||| ||| ||||||| ||||| ||||| || ||| |||| ||
Sbjct 306 CCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG- 364
Query 3020 TCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TGAGGATTATAA 3072
|||| || | | ||| ||||||| | ||| || | || || ||| |
Sbjct 365 ---GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCTCG 418
Query 3073 ATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATAC 3132
| || | ||| | | || ||| || |||||||| || ||||| || || ||
Sbjct 419 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 478
Query 3133 TCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGC 3192
| ||| | ||||| ||| ||| | |||||||||||||||| || |||||
Sbjct 479 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 538
Query 3193 CGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGA 3252
|| || ||||| || ||||| || || |||||||||||||||||| ||||||| |||
Sbjct 539 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 598
Query 3253 CATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCT 3312
|||| || || ||| | || || ||||| | |||||| |||||| | || |
Sbjct 599 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 658
Query 3313 CATGCGCTCTGAATTTTGGGCATCTGGCTATGA 3345
|||||||||| | | |||||||||||||||||
Sbjct 659 CATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17733300965980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |