Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_001422.1
Length=5386
Score E
Sequences producing significant alignments: (Bits) Value
seq4415 1512 0.0
seq4884 1251 0.0
>seq4415
Length=843
Score = 1512 bits (1676), Expect = 0.0
Identities = 841/843 (99%), Gaps = 0/843 (0%)
Strand=Plus/Plus
Query 225 GTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATA 60
Query 285 TGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATT 120
Query 345 ACTATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACT 180
Query 405 GAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCC 240
Query 465 GTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCT 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCT 300
Query 525 ACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTT 360
Query 585 GTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTAT 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTAT 420
Query 645 GTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAA 480
Query 705 AACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTG 540
Query 765 CGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAA 600
Query 825 TTACGTGCGGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTG 884
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTG 660
Query 885 GTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATG 720
Query 945 TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGT 780
Query 1005 CTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG 840
Query 1065 CTG 1067
|||
Sbjct 841 CTG 843
>seq4884
Length=693
Score = 1251 bits (1386), Expect = 0.0
Identities = 693/693 (100%), Gaps = 0/693 (0%)
Strand=Plus/Plus
Query 1056 GCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTG 60
Query 1116 GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCC 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCC 120
Query 1176 TTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATG 180
Query 1236 GTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA 240
Query 1296 ACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATA 300
Query 1356 AAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGC 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGC 360
Query 1416 CGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTT 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTT 420
Query 1476 ATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTG 480
Query 1536 AGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTG 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTG 540
Query 1596 CTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATG 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATG 600
Query 1656 TTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCA 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCA 660
Query 1716 TGCGCTCTAATCTCTGGGCATCTGGCTATGATG 1748
|||||||||||||||||||||||||||||||||
Sbjct 661 TGCGCTCTAATCTCTGGGCATCTGGCTATGATG 693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17122138843190
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