Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq4884 414 4e-112 seq4415 374 3e-100 >seq4884 Length=693 Score = 414 bits (458), Expect = 4e-112 Identities = 499/676 (74%), Gaps = 2/676 (0%) Strand=Plus/Plus Query 3134 GATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCT 3193 ||||||||| | | || ||||| ||||| |||||||||||||| ||||| ||| | Sbjct 17 GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGAT 76 Query 3194 TGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAA 3253 || || ||||| ||| | ||||||||||| |||||||||| | || ||||| |||| Sbjct 77 GGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTAC 136 Query 3254 GGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGATTCA 3313 || ||| |||| ||||| ||| | || |||||||| ||||||||||| ||||||||| | Sbjct 137 TGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAA 196 Query 3314 ATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTATCC 3373 || ||| ||||||||| |||| | || || || | |||| |||||| ||| Sbjct 197 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATAT 256 Query 3374 GGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTT 3433 || |||| | || | |||| || ||| ||| | | ||| || |||||| ||| Sbjct 257 TGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTT 316 Query 3434 GCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCG 3493 | |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| || Sbjct 317 GTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCG 376 Query 3494 TACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTT 3552 ||| || ||||| ||| | |||| ||| |||||| |||||||||| |||||||| | Sbjct 377 TACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 435 Query 3553 GCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAA 3612 ||||||| |||| |||||| ||||||| |||||||| || ||| |||| || |||| Sbjct 436 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 495 Query 3613 TGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTC 3672 || | | | || || ||||| ||||||||| |||| || |||||||| | | | Sbjct 496 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 555 Query 3673 ACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTG 3732 | ||||| || || ||| ||| || ||||||||||||| ||||||||| || |||| Sbjct 556 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 615 Query 3733 GCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTT 3792 | ||| |||||| ||||| || || ||||| || || ||||| |||| | || | | Sbjct 616 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 675 Query 3793 GGGCTTCCGGTTACGA 3808 |||| || || || || Sbjct 676 GGGCATCTGGCTATGA 691 >seq4415 Length=843 Score = 374 bits (414), Expect = 3e-100 Identities = 422/568 (74%), Gaps = 48/568 (8%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 229 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 288 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 289 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 348 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 349 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 408 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 409 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 468 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 469 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 528 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 529 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 588 Query 2919 GCTCGTCAGAAATTACGCGCAAATGG---GTTGAAATG---ATATGAAAAAAGCACGT-- 2970 | ||||| |||||||| ||| | || | || |||| | | | ||||| |||| Sbjct 589 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 646 Query 2971 ---CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGC 2996 || || ||| ||||| |||||||| || Sbjct 647 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 706 Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATT-ATGGGCCTTCGGGCCC---CTTA 3052 ||| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| Sbjct 707 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 766 Query 3053 AGGATTATTAATGTCTAATGTACAAACT 3080 ||||| | | ||||||||| | |||||| Sbjct 767 AGGATAAATTATGTCTAATATTCAAACT 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368365333272