Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq4884 414 4e-112
seq4415 374 3e-100
>seq4884
Length=693
Score = 414 bits (458), Expect = 4e-112
Identities = 499/676 (74%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 3134 GATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCT 3193
||||||||| | | || ||||| ||||| |||||||||||||| ||||| ||| |
Sbjct 17 GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGAT 76
Query 3194 TGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAA 3253
|| || ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||
Sbjct 77 GGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTAC 136
Query 3254 GGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGATTCA 3313
|| ||| |||| ||||| ||| | || |||||||| ||||||||||| ||||||||| |
Sbjct 137 TGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAA 196
Query 3314 ATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTATCC 3373
|| ||| ||||||||| |||| | || || || | |||| |||||| |||
Sbjct 197 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATAT 256
Query 3374 GGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTT 3433
|| |||| | || | |||| || ||| ||| | | ||| || |||||| |||
Sbjct 257 TGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTT 316
Query 3434 GCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCG 3493
| |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 317 GTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCG 376
Query 3494 TACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTT 3552
||| || ||||| ||| | |||| ||| |||||| |||||||||| |||||||| |
Sbjct 377 TACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 435
Query 3553 GCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAA 3612
||||||| |||| |||||| ||||||| |||||||| || ||| |||| || ||||
Sbjct 436 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 495
Query 3613 TGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTC 3672
|| | | | || || ||||| ||||||||| |||| || |||||||| | | |
Sbjct 496 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 555
Query 3673 ACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTG 3732
| ||||| || || ||| ||| || ||||||||||||| ||||||||| || ||||
Sbjct 556 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 615
Query 3733 GCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTT 3792
| ||| |||||| ||||| || || ||||| || || ||||| |||| | || | |
Sbjct 616 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 675
Query 3793 GGGCTTCCGGTTACGA 3808
|||| || || || ||
Sbjct 676 GGGCATCTGGCTATGA 691
>seq4415
Length=843
Score = 374 bits (414), Expect = 3e-100
Identities = 422/568 (74%), Gaps = 48/568 (8%)
Strand=Plus/Plus
Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618
|||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | ||
Sbjct 229 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 288
Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678
|||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 289 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 348
Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 349 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 408
Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798
|||||||||||||||||||||||||||||||| || || || ||| | |||||||||||
Sbjct 409 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 468
Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858
|| |||| |||||||||||||||||||||||||| |||||||| |||||||| | |||
Sbjct 469 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 528
Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918
|||| ||| ||||| | |||||| || || | | | ||| || ||||| ||
Sbjct 529 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 588
Query 2919 GCTCGTCAGAAATTACGCGCAAATGG---GTTGAAATG---ATATGAAAAAAGCACGT-- 2970
| ||||| |||||||| ||| | || | || |||| | | | ||||| ||||
Sbjct 589 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 646
Query 2971 ---CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGC 2996
|| || ||| ||||| |||||||| ||
Sbjct 647 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 706
Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATT-ATGGGCCTTCGGGCCC---CTTA 3052
||| || ||||||||||| ||| || |||||||| ||| |||||| ||| |||
Sbjct 707 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 766
Query 3053 AGGATTATTAATGTCTAATGTACAAACT 3080
||||| | | ||||||||| | ||||||
Sbjct 767 AGGATAAATTATGTCTAATATTCAAACT 794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19368365333272
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