Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq4415 462 8e-127 seq4884 251 2e-63 >seq4415 Length=843 Score = 462 bits (512), Expect = 8e-127 Identities = 608/844 (72%), Gaps = 52/844 (6%) Strand=Plus/Plus Query 1816 GACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAA 1875 || ||||| || | || |||||||| || | || ||||||||||||| | || || Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64 Query 1876 GAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTA 1935 |||||| || ||||||| | | || | ||||| | ||||| || |||||| || || Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124 Query 1936 TCCACATCAA--------CAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGA 1984 || || |||||| | || ||| || | | |||| | || || Sbjct 125 TCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGA 182 Query 1985 ATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGT 2044 | | || ||| || ||| | || ||||| ||||||||||||||||| | || Sbjct 183 ACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGT 242 Query 2045 GCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCAC 2104 |||| | |||||||| || |||||||| | || || || || |||||||| || Sbjct 243 TTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTAC 302 Query 2105 TGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGT 2164 ||||||||| |||||||| ||| ||||||| ||||| |||||||| |||||||||| Sbjct 303 TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGT 362 Query 2165 CGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2224 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 422 Query 2225 TCATCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAA 2284 ||||||||| ||||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 423 TCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAA 482 Query 2285 TATTATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCG 2344 ||||| ||||| | || | || ||||| ||||||||| | ||||| |||||| |||| Sbjct 483 CATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCG 542 Query 2345 TGTACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTACGTGAACAATT 2404 ||||||||| |||||||||||| | |||| | |||||| ||||| ||| || |||| Sbjct 543 TGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATT 602 Query 2405 ACGTGCTCAAGGAGTAATGTAATGGCTAAA---------------GGCTCTCG---TCGG 2446 |||||| ||||||| |||||||| ||||| ||| |||| | | Sbjct 603 ACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGT 662 Query 2447 CGTTC---GCCGTCCCG-----CT----------CTAAAGGTGCTCGCCTCTGGTATGTT 2488 ||| | ||||| || || |||||| ||||| || |||||||| Sbjct 663 CGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTA 722 Query 2489 GGCGGCACACAATTCTAATCTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATG 2548 || || |||||| ||| || |||||||||||||||| || || |||||| | ||| Sbjct 723 GGTGGTCAACAATTTTAA--TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATG 779 Query 2549 TCTAACGTTCAAACTTCCGCTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCNNN 2608 ||||| |||||||| ||| || || || || | |||||||| || || | |||| Sbjct 780 TCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT 839 Query 2609 GCTG 2612 |||| Sbjct 840 GCTG 843 >seq4884 Length=693 Score = 251 bits (278), Expect = 2e-63 Identities = 481/699 (69%), Gaps = 18/699 (3%) Strand=Plus/Plus Query 2602 CTTCNNNGCTGGTAAAATCGGCCGTTTAAAAACTATCTCCTGGACTCCAGTTGTCGCTGG 2661 |||| |||||| | || || ||| | | || || || ||||| ||| ||||||| Sbjct 2 CTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGG 61 Query 2662 CGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCT 2721 |||||| || || | || || |||||| | || ||||||||| | ||||| ||||| Sbjct 62 CGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCT 121 Query 2722 TGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTATATTCCGCATCGTCATATCTATGG 2781 ||| | |||||| || || || || |||| ||| | || |||||||| | ||||| Sbjct 122 TGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGG 181 Query 2782 TCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAATGCCACTCCTCTCGCACCTGTTAC 2841 | || | | ||| | |||||||| | ||| |||||||||||||||||| | |||||| Sbjct 182 TGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA 241 Query 2842 TACTGCCTCTGGCTGGGATGCTTCTGCC---TATCTTGGCACTATTCCATCCTCAAACCT 2898 ||| | ||| | || |||| | ||||||||| ||| | ||| | ||| Sbjct 242 CACTAC---TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTA-ACCCTGATACCA 297 Query 2899 C-AAGGTTCCTAAATTCTTACATCAAGGATACCTTAATATTTACAACAACTACTTTAAGC 2957 || | ||||| || ||| || || | ||||| || |||||||| ||||| Sbjct 298 ATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAG 357 Query 2958 CACCGTGGGATGC-TGACCTTACATACGCTAACCCATCTAACATGCCTGAACAGGATTAT 3016 | |||||| |||| ||||| ||| | |||||||| ||| || | | || ||| || Sbjct 358 CGCCGTGG-ATGCCTGACCGTACCGAGGCTAACCC---TAATGAGCTTAATCAAGATGAT 413 Query 3017 AAATGG---GGCGTTCGTGTC-GCTAACTTAAAATCTATCTGGACCGCCCCCTTACCTCC 3072 | || | ||| | || | || |||| | || ||||| || || | ||||| Sbjct 414 GCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCC 472 Query 3073 TAACTCTAAAACATCAGAGACTATGACCACTGGCGCTACGTCTATTGATATTATGGGCCT 3132 | | || | || ||||| ||| | || |||||||| |||||||| || Sbjct 473 TGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCT 532 Query 3133 GCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAACGTGACTACTTCATGACTCGCTA 3192 |||||||||||||||||| ||||| || | ||||||||||| ||||||||| || || Sbjct 533 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTA 592 Query 3193 TCGCGATATTATGAAAGACTTCGGAGGTCACACCTCCTATGACGGTGATAACCGTCCTCT 3252 | ||| |||| || |||||| | ||||| ||||||| ||| ||||||||| | Sbjct 593 CCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTT 652 Query 3253 GCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTATGA 3291 || | ||||||||| | | ||||| ||||||||||| Sbjct 653 ACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442119012190