Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_007817.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq4415 462 8e-127
seq4884 251 2e-63
>seq4415
Length=843
Score = 462 bits (512), Expect = 8e-127
Identities = 608/844 (72%), Gaps = 52/844 (6%)
Strand=Plus/Plus
Query 1816 GACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAA 1875
|| ||||| || | || |||||||| || | || ||||||||||||| | || ||
Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64
Query 1876 GAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTA 1935
|||||| || ||||||| | | || | ||||| | ||||| || |||||| || ||
Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124
Query 1936 TCCACATCAA--------CAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGA 1984
|| || |||||| | || ||| || | | |||| | || ||
Sbjct 125 TCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGA 182
Query 1985 ATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGT 2044
| | || ||| || ||| | || ||||| ||||||||||||||||| | ||
Sbjct 183 ACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGT 242
Query 2045 GCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCAC 2104
|||| | |||||||| || |||||||| | || || || || |||||||| ||
Sbjct 243 TTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTAC 302
Query 2105 TGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGT 2164
||||||||| |||||||| ||| ||||||| ||||| |||||||| ||||||||||
Sbjct 303 TGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGT 362
Query 2165 CGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 2224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGT 422
Query 2225 TCATCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAA 2284
||||||||| ||||| || || || ||||| || ||||||||||| || || || |||||
Sbjct 423 TCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAA 482
Query 2285 TATTATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCG 2344
||||| ||||| | || | || ||||| ||||||||| | ||||| |||||| ||||
Sbjct 483 CATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCG 542
Query 2345 TGTACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTACGTGAACAATT 2404
||||||||| |||||||||||| | |||| | |||||| ||||| ||| || ||||
Sbjct 543 TGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATT 602
Query 2405 ACGTGCTCAAGGAGTAATGTAATGGCTAAA---------------GGCTCTCG---TCGG 2446
|||||| ||||||| |||||||| ||||| ||| |||| | |
Sbjct 603 ACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGT 662
Query 2447 CGTTC---GCCGTCCCG-----CT----------CTAAAGGTGCTCGCCTCTGGTATGTT 2488
||| | ||||| || || |||||| ||||| || ||||||||
Sbjct 663 CGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTA 722
Query 2489 GGCGGCACACAATTCTAATCTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATG 2548
|| || |||||| ||| || |||||||||||||||| || || |||||| | |||
Sbjct 723 GGTGGTCAACAATTTTAA--TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATG 779
Query 2549 TCTAACGTTCAAACTTCCGCTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCNNN 2608
||||| |||||||| ||| || || || || | |||||||| || || | ||||
Sbjct 780 TCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTT 839
Query 2609 GCTG 2612
||||
Sbjct 840 GCTG 843
>seq4884
Length=693
Score = 251 bits (278), Expect = 2e-63
Identities = 481/699 (69%), Gaps = 18/699 (3%)
Strand=Plus/Plus
Query 2602 CTTCNNNGCTGGTAAAATCGGCCGTTTAAAAACTATCTCCTGGACTCCAGTTGTCGCTGG 2661
|||| |||||| | || || ||| | | || || || ||||| ||| |||||||
Sbjct 2 CTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGG 61
Query 2662 CGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGCCTTTCTCCACTCCGTCGCGGCCT 2721
|||||| || || | || || |||||| | || ||||||||| | ||||| |||||
Sbjct 62 CGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCT 121
Query 2722 TGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTATATTCCGCATCGTCATATCTATGG 2781
||| | |||||| || || || || |||| ||| | || |||||||| | |||||
Sbjct 122 TGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGG 181
Query 2782 TCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAATGCCACTCCTCTCGCACCTGTTAC 2841
| || | | ||| | |||||||| | ||| |||||||||||||||||| | ||||||
Sbjct 182 TGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA 241
Query 2842 TACTGCCTCTGGCTGGGATGCTTCTGCC---TATCTTGGCACTATTCCATCCTCAAACCT 2898
||| | ||| | || |||| | ||||||||| ||| | ||| | |||
Sbjct 242 CACTAC---TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTA-ACCCTGATACCA 297
Query 2899 C-AAGGTTCCTAAATTCTTACATCAAGGATACCTTAATATTTACAACAACTACTTTAAGC 2957
|| | ||||| || ||| || || | ||||| || |||||||| |||||
Sbjct 298 ATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAG 357
Query 2958 CACCGTGGGATGC-TGACCTTACATACGCTAACCCATCTAACATGCCTGAACAGGATTAT 3016
| |||||| |||| ||||| ||| | |||||||| ||| || | | || ||| ||
Sbjct 358 CGCCGTGG-ATGCCTGACCGTACCGAGGCTAACCC---TAATGAGCTTAATCAAGATGAT 413
Query 3017 AAATGG---GGCGTTCGTGTC-GCTAACTTAAAATCTATCTGGACCGCCCCCTTACCTCC 3072
| || | ||| | || | || |||| | || ||||| || || | |||||
Sbjct 414 GCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCC 472
Query 3073 TAACTCTAAAACATCAGAGACTATGACCACTGGCGCTACGTCTATTGATATTATGGGCCT 3132
| | || | || ||||| ||| | || |||||||| |||||||| ||
Sbjct 473 TGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCT 532
Query 3133 GCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAACGTGACTACTTCATGACTCGCTA 3192
|||||||||||||||||| ||||| || | ||||||||||| ||||||||| || ||
Sbjct 533 GCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTA 592
Query 3193 TCGCGATATTATGAAAGACTTCGGAGGTCACACCTCCTATGACGGTGATAACCGTCCTCT 3252
| ||| |||| || |||||| | ||||| ||||||| ||| ||||||||| |
Sbjct 593 CCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTT 652
Query 3253 GCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTATGA 3291
|| | ||||||||| | | ||||| |||||||||||
Sbjct 653 ACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17442119012190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |