Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq4415 520 3e-144 seq4884 224 3e-55 >seq4415 Length=843 Score = 520 bits (576), Expect = 3e-144 Identities = 615/831 (74%), Gaps = 50/831 (6%) Strand=Plus/Plus Query 1822 GATGAAGAAAAATGGCTCAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAA 1881 ||||| || || ||||| |||||| | ||| | | | ||||||||||| | ||||| Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64 Query 1882 CAACATTTCGTACATGGCAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTA 1941 |||||| || ||||| | ||| || | |||||||| |||| || ||||| || || Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124 Query 1942 TCCACCTTGCCAAATG--GCTTAACTTACAA-AGGAATCAAAA-ATGA---AAGCAAATG 1994 || | | ||| | | ||| || ||| | ||| |||| ||| | || Sbjct 125 TCTGAGT---CCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTG 181 Query 1995 AGAACGCAGTAGCCTTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTG 2054 | | | ||| || || |||||| | ||||| || || || |||||||| ||| | | Sbjct 182 AACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCG 241 Query 2055 TTCTTGACCTGACTGAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAA 2114 || | || | || || || |||||||| || | || || || || |||||||| | Sbjct 242 TTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTA 301 Query 2115 CTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTG 2174 |||||||||| |||||||| ||| ||||||||||||||||||| || |||||||||| Sbjct 302 CTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTG 361 Query 2175 TGGGATACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATG 2234 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 362 TAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATG 421 Query 2235 TTCATCCCGTTAACATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAA 2294 |||||||||| |||||||||||||| ||||| || ||||||||||||||||| || |||| Sbjct 422 TTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAA 481 Query 2295 ACATCATTAATGGTGTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGC 2354 |||| |||||||| ||||| |||||||||||||||||| | |||||||||||||||| Sbjct 482 ACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGC 541 Query 2355 GTGTACGCGCCGGAAACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAAC 2414 |||||||||| ||||||||||| || ||||| |||||||| | || | |||| ||||| Sbjct 542 GTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAAT 601 Query 2415 TGCGCGCTCAAGGAGTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGG 2464 | || || ||||||||||| ||||| ||||||| | | || ||| |||| Sbjct 602 TACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGG 661 Query 2465 T---------------------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGT 2497 | ||||| |||||| ||||| || |||||||| Sbjct 662 TCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT 721 Query 2498 TGGCGGCACACAATTCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAAT 2557 || || |||||| |||| | |||||||||||||||| || || |||||| | || Sbjct 722 AGGTGGTCAACAATTTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTAT 778 Query 2558 GTCTAACGTACAAACTTCCGCTGAACGTATTCCGCATGACCTCTCACATCT 2608 |||||| | |||||| ||| || ||||| ||||||||||| || ||||| Sbjct 779 GTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCT 829 >seq4884 Length=693 Score = 224 bits (248), Expect = 3e-55 Identities = 478/700 (68%), Gaps = 34/700 (5%) Strand=Plus/Plus Query 2619 GCTGGTAAAATCGGACGCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCT 2678 |||||| | || || || |||| || || || ||||| ||| ||||||| || || Sbjct 9 GCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCC 68 Query 2679 TACGAAACTGAAATGGTAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTC 2738 | ||| | || || |||||| | ||||||||||| | |||||||| || ||| | Sbjct 69 TTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATT 128 Query 2739 GACTCTCGCGTCGACGTCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAA 2798 |||||| || ||| | |||||||| ||| ||||||||||||| || |||||| |||| Sbjct 129 GACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAG 188 Query 2799 TGGATTGACTTTATGAAGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTC 2857 |||||| | || |||||| ||| ||||| || |||||||| | | | |||| | Sbjct 189 TGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----AC 244 Query 2858 CTCTGGCT---GGGATTCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAA 2911 |||| | || ||| || | ||||||||| || ||| || ||| || Sbjct 245 TACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AA 301 Query 2912 GGTTCCTAA--ATTCCTTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCG 2969 | ||||| ||| || ||| |||| | ||||| || |||||||| ||||| || Sbjct 302 AATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCG 359 Query 2970 CCGTGGTCTAATGACCTCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACA 3027 |||||| ||||| ||| | ||||||| ||||| || | | ||| | | Sbjct 360 CCGTGGATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCT 416 Query 3028 AATGGGGCGTTC--GTGTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGA 3085 | | ||| || || | || |||| | || ||||| || || ||||||||||| Sbjct 417 CGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGA 475 Query 3086 TTCATTAAC-TAAGCAGGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCC 3141 | | | | | | | ||||| ||| |||||| |||| || |||||||| | Sbjct 476 GAC-TGAGCTTTCTCGCCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTC 531 Query 3142 TACAAGCTGCCTATGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCT 3201 | |||||||| |||||||| | || ||||| || |||||||| || |||||| || | Sbjct 532 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 591 Query 3202 ACCGCGATATTATGAAAGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTC 3261 ||| ||| |||| ||||| ||| | ||||| || |||| ||| ||||||||| Sbjct 592 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTT 651 Query 3262 TGCTCCTGATGCGCTCTGAATTTTGGGCCTCTGGCTATGA 3301 | || | ||||||||| | | ||||| ||||||||||| Sbjct 652 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442119012190