Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_007856.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq4415 520 3e-144
seq4884 224 3e-55
>seq4415
Length=843
Score = 520 bits (576), Expect = 3e-144
Identities = 615/831 (74%), Gaps = 50/831 (6%)
Strand=Plus/Plus
Query 1822 GATGAAGAAAAATGGCTCAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAA 1881
||||| || || ||||| |||||| | ||| | | | ||||||||||| | |||||
Sbjct 5 GATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAG 64
Query 1882 CAACATTTCGTACATGGCAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTA 1941
|||||| || ||||| | ||| || | |||||||| |||| || ||||| || ||
Sbjct 65 TCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTA 124
Query 1942 TCCACCTTGCCAAATG--GCTTAACTTACAA-AGGAATCAAAA-ATGA---AAGCAAATG 1994
|| | | ||| | | ||| || ||| | ||| |||| ||| | ||
Sbjct 125 TCTGAGT---CCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTG 181
Query 1995 AGAACGCAGTAGCCTTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTG 2054
| | | ||| || || |||||| | ||||| || || || |||||||| ||| | |
Sbjct 182 AACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCG 241
Query 2055 TTCTTGACCTGACTGAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAA 2114
|| | || | || || || |||||||| || | || || || || |||||||| |
Sbjct 242 TTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTA 301
Query 2115 CTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTG 2174
|||||||||| |||||||| ||| ||||||||||||||||||| || ||||||||||
Sbjct 302 CTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTG 361
Query 2175 TGGGATACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATG 2234
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 362 TAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATG 421
Query 2235 TTCATCCCGTTAACATTCAAACGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAA 2294
|||||||||| |||||||||||||| ||||| || ||||||||||||||||| || ||||
Sbjct 422 TTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAA 481
Query 2295 ACATCATTAATGGTGTCGATGCCCCGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGC 2354
|||| |||||||| ||||| |||||||||||||||||| | ||||||||||||||||
Sbjct 482 ACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGC 541
Query 2355 GTGTACGCGCCGGAAACACTGAGCTTATTACTTACGCAGAAAACAATGCGCGTGAAAAAC 2414
|||||||||| ||||||||||| || ||||| |||||||| | || | |||| |||||
Sbjct 542 GTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAAT 601
Query 2415 TGCGCGCTCAAGGAGTGATG-GATGTC------TAAAAAATCTATTCGC---CGCTCTGG 2464
| || || ||||||||||| ||||| ||||||| | | || ||| ||||
Sbjct 602 TACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGG 661
Query 2465 T---------------------------GGCAAATCTAAAGGTGCTCGCCTCTGGTATGT 2497
| ||||| |||||| ||||| || ||||||||
Sbjct 662 TCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT 721
Query 2498 TGGCGGCACACAATTCTAATCTCTAAGGGGCTTCGGCCCCTCTATTTAAGGATACAAAAT 2557
|| || |||||| |||| | |||||||||||||||| || || |||||| | ||
Sbjct 722 AGGTGGTCAACAATTTTAATTGC--AGGGGCTTCGGCCCCT-TACTTGAGGATAAATTAT 778
Query 2558 GTCTAACGTACAAACTTCCGCTGAACGTATTCCGCATGACCTCTCACATCT 2608
|||||| | |||||| ||| || ||||| ||||||||||| || |||||
Sbjct 779 GTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCT 829
>seq4884
Length=693
Score = 224 bits (248), Expect = 3e-55
Identities = 478/700 (68%), Gaps = 34/700 (5%)
Strand=Plus/Plus
Query 2619 GCTGGTAAAATCGGACGCCTTAAAACTATCTCCTGGACTCCTGTTGTCGCTGGTGATTCT 2678
|||||| | || || || |||| || || || ||||| ||| ||||||| || ||
Sbjct 9 GCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCC 68
Query 2679 TACGAAACTGAAATGGTAGGCGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTC 2738
| ||| | || || |||||| | ||||||||||| | |||||||| || ||| |
Sbjct 69 TTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATT 128
Query 2739 GACTCTCGCGTCGACGTCTTTACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAA 2798
|||||| || ||| | |||||||| ||| ||||||||||||| || |||||| ||||
Sbjct 129 GACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAG 188
Query 2799 TGGATTGACTTTATGAAGACTGGCGTTAACGCTACTCCTCTGGC-TCCGGTAACTTGTTC 2857
|||||| | || |||||| ||| ||||| || |||||||| | | | |||| |
Sbjct 189 TGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAAC----AC 244
Query 2858 CTCTGGCT---GGGATTCTGCTGCCTATCTTGGCAC---TATCCCGTCAACTAATTTGAA 2911
|||| | || ||| || | ||||||||| || ||| || ||| ||
Sbjct 245 TACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAAT---AA 301
Query 2912 GGTTCCTAA--ATTCCTTCATCAATCTTATCTCAATATTTACAACAACTACTTTAAGCCG 2969
| ||||| ||| || ||| |||| | ||||| || |||||||| ||||| ||
Sbjct 302 AATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCG 359
Query 2970 CCGTGGTCTAATGACCTCACCTATGCTAACCCATCTAATATGCCCGCTGAGGAT--TACA 3027
|||||| ||||| ||| | ||||||| ||||| || | | ||| | |
Sbjct 360 CCGTGGATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAGATGATGCT 416
Query 3028 AATGGGGCGTTC--GTGTCGCTAACTTAAAATCTATCTGGACCGCGCCCCTTCCTCCTGA 3085
| | ||| || || | || |||| | || ||||| || || |||||||||||
Sbjct 417 CGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGA 475
Query 3086 TTCATTAAC-TAAGCAGGATATGACTACTGGCGCTACCA---CTATCGATATTATGGGCC 3141
| | | | | | | ||||| ||| |||||| |||| || |||||||| |
Sbjct 476 GAC-TGAGCTTTCTCGCCAAATGACGACT---TCTACCACATCTATTGACATTATGGGTC 531
Query 3142 TACAAGCTGCCTATGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCT 3201
| |||||||| |||||||| | || ||||| || |||||||| || |||||| || |
Sbjct 532 TGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTT 591
Query 3202 ACCGCGATATTATGAAAGACTTTGGCGGTCACACCTCCTACGACGGTGATAACCGTCCTC 3261
||| ||| |||| ||||| ||| | ||||| || |||| ||| |||||||||
Sbjct 592 ACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTT 651
Query 3262 TGCTCCTGATGCGCTCTGAATTTTGGGCCTCTGGCTATGA 3301
| || | ||||||||| | | ||||| |||||||||||
Sbjct 652 TACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGA 691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17442119012190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |