Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq4884 430 5e-117 seq4415 370 4e-99 >seq4884 Length=693 Score = 430 bits (476), Expect = 5e-117 Identities = 504/679 (74%), Gaps = 8/679 (1%) Strand=Plus/Plus Query 3137 GATTGGTCGTTTGAAAACTGTTTCATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCT 3196 |||||||||| | | || ||||| ||||| ||||| |||||||| ||||| ||| | Sbjct 17 GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGAT 76 Query 3197 TGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAA 3256 || || ||||||||| | ||||||||||| |||||||||| | ||||||||||||| Sbjct 77 GGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTAC 136 Query 3257 GGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGACCAGTGGATTCA 3316 || || |||| ||||| ||| | || ||||| || ||||||||||| ||||||||| | Sbjct 137 TGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAA 196 Query 3317 ATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTATCC 3376 || ||| ||||||||| ||||| | || ||||| | |||| |||||| ||| Sbjct 197 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATAT 256 Query 3377 GGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTT 3436 || | || | || | |||| || ||| ||| | | ||| || |||||| ||| Sbjct 257 TGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTT 316 Query 3437 GCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCG 3496 | |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| || Sbjct 317 GTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCG 376 Query 3497 TACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATGGATTCCGTT 3552 ||| || ||||| ||| ||| ||| | | |||||| |||| ||||| ||||||| Sbjct 377 TACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTT 432 Query 3553 GCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGC 3612 |||||||||| |||| |||||| ||||||| |||||||| || ||| |||| || | Sbjct 433 GCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCC 492 Query 3613 AAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGC 3672 ||||| | | | || || ||||| ||||||||| |||| || |||||||| | Sbjct 493 AAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATT 552 Query 3673 TTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCT 3732 | |||||||| || || ||| ||| |||||||||||||| | ||||||||| || | Sbjct 553 TGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCAT 612 Query 3733 TTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATT 3792 |||| ||| |||||| ||||| || || ||||| || || ||||| |||| | | || Sbjct 613 TTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATC 672 Query 3793 TCTGGGCTTCCGGTTACGA 3811 ||||||| || || || || Sbjct 673 TCTGGGCATCTGGCTATGA 691 >seq4415 Length=843 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 227 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 286 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 287 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 346 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 347 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 406 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 407 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 466 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 467 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 526 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 527 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 586 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 587 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384364313392