Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_012868.1
Length=6094
Score E
Sequences producing significant alignments: (Bits) Value
seq4884 430 5e-117
seq4415 370 4e-99
>seq4884
Length=693
Score = 430 bits (476), Expect = 5e-117
Identities = 504/679 (74%), Gaps = 8/679 (1%)
Strand=Plus/Plus
Query 3137 GATTGGTCGTTTGAAAACTGTTTCATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCT 3196
|||||||||| | | || ||||| ||||| ||||| |||||||| ||||| ||| |
Sbjct 17 GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGAT 76
Query 3197 TGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAA 3256
|| || ||||||||| | ||||||||||| |||||||||| | |||||||||||||
Sbjct 77 GGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTAC 136
Query 3257 GGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGACCAGTGGATTCA 3316
|| || |||| ||||| ||| | || ||||| || ||||||||||| ||||||||| |
Sbjct 137 TGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAA 196
Query 3317 ATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTATCC 3376
|| ||| ||||||||| ||||| | || ||||| | |||| |||||| |||
Sbjct 197 GTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATAT 256
Query 3377 GGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTT 3436
|| | || | || | |||| || ||| ||| | | ||| || |||||| |||
Sbjct 257 TGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTT 316
Query 3437 GCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCG 3496
| |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 317 GTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCG 376
Query 3497 TACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATGGATTCCGTT 3552
||| || ||||| ||| ||| ||| | | |||||| |||| ||||| |||||||
Sbjct 377 TACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTT 432
Query 3553 GCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGC 3612
|||||||||| |||| |||||| ||||||| |||||||| || ||| |||| || |
Sbjct 433 GCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCC 492
Query 3613 AAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGC 3672
||||| | | | || || ||||| ||||||||| |||| || |||||||| |
Sbjct 493 AAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATT 552
Query 3673 TTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCT 3732
| |||||||| || || ||| ||| |||||||||||||| | ||||||||| || |
Sbjct 553 TGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCAT 612
Query 3733 TTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATT 3792
|||| ||| |||||| ||||| || || ||||| || || ||||| |||| | | ||
Sbjct 613 TTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATC 672
Query 3793 TCTGGGCTTCCGGTTACGA 3811
||||||| || || || ||
Sbjct 673 TCTGGGCATCTGGCTATGA 691
>seq4415
Length=843
Score = 370 bits (410), Expect = 4e-99
Identities = 318/393 (81%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616
|||||||| || ||| ||||| | || || || |||||||| || ||||| || | |
Sbjct 227 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 286
Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676
| |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||
Sbjct 287 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 346
Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736
| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 347 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 406
Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796
|||||||||||||||||||||||||||||||||| || || || ||| | ||||||||||
Sbjct 407 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 466
Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856
| || |||| ||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 467 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 526
Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916
|||||| ||| ||||| | |||||| || || | | | ||| || || ||||
Sbjct 527 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 586
Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949
| | ||||| |||||||| ||| | ||| |||
Sbjct 587 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19384364313392
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