Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq877 233 7e-58 seq533 163 1e-36 >seq877 Length=487 Score = 233 bits (258), Expect = 7e-58 Identities = 146/157 (93%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171 CTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGA 230 ||||| |||| | ||||||| |||||||||| | |||| || ||||||||||| ||||| Sbjct 331 CTCTTCCTTTTCTACCTTTCTCCATCAACTACCCCTTCTTTCCAAAACTGACGCTTTGGA 390 Query 231 TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTC 290 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 391 TGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTATATATGAGTC 450 Query 291 ACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATT 327 ||||||||||||||||||||||||||||||||||||| Sbjct 451 ACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATT 487 >seq533 Length=300 Score = 163 bits (180), Expect = 1e-36 Identities = 110/123 (89%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1420 GATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGG 1479 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 300 GATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCGTGTTATGG 241 Query 1480 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 1539 | |||| || |||||||||||||||||| ||||| | ||||||||||||||||| | Sbjct 240 TGGAAGTTGATGAAATCTCAAAAACATTTGGAATGCTCAGATTCCTCCTGAGACTGAGAT 181 Query 1540 TTC 1542 ||| Sbjct 180 TTC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17123035189200