Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq1053 1101 0.0 >seq1053 Length=723 Score = 1101 bits (1220), Expect = 0.0 Identities = 618/623 (99%), Gaps = 0/623 (0%) Strand=Plus/Minus Query 4764 CTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAAT 4823 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 723 CTTCATTTCCATGCGGTGCACGTTATGCGGACACTTCCTACAGGTAGCGTTTACCCTAAT 664 Query 4824 TTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTAT 4883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 TTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTAT 604 Query 4884 GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGG 4943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 GGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGG 544 Query 4944 TTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGT 5003 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TTGTGGCTTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGT 484 Query 5004 TTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTA 5063 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 483 TTCTATGTGTCTAAATACGTTAACAAAAAGTCAGATATCGACCTTGCTGCTAAAGGTCTA 424 Query 5064 GGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTG 5123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 GGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTG 364 Query 5124 TTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCC 5183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 TTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCC 304 Query 5184 ACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATA 5243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 ACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATA 244 Query 5244 TTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGAC 5303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGAC 184 Query 5304 GTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAA 5363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAA 124 Query 5364 ATGATTGGCGTATCCAACCTGCA 5386 ||||||||||||||||||||||| Sbjct 123 ATGATTGGCGTATCCAACCTGCA 101 Score = 181 bits (200), Expect = 4e-42 Identities = 100/100 (100%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 1 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAA 41 Query 61 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTA 100 |||||||||||||||||||||||||||||||||||||||| Sbjct 40 AAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17122943794120