Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq1053 536 4e-149 >seq1053 Length=723 Score = 536 bits (594), Expect = 4e-149 Identities = 550/718 (77%), Gaps = 8/718 (1%) Strand=Plus/Minus Query 968 CATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTTCTATCGACCCTAACTTT 1027 ||||| || || |||||| ||||||| ||||||||| ||| | ||||||| ||| Sbjct 720 CATTTCCATGCGGTGCACGTTATGCGGACACTTCCTACAGGTAGCGTTTACCCTAATTTT 661 Query 1028 GGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAAATACATGGCCCTATGGT 1087 || | ||| || | | || || ||||||||||||||||||| ||||| |||||| Sbjct 660 GGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGT 601 Query 1088 TACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTTCGCGCGCTGGCTGGCTC 1147 ||| |||||||||||| || || ||| | || ||||| ||||| || |||| ||| | Sbjct 600 TACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTG 541 Query 1148 TGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTC 1207 |||| |||||| | || || || || |||||||||||| ||||||||||| || ||| Sbjct 540 TGGCTTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTC 481 Query 1208 TACGTCGCTAAATACGTTAACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGG 1267 || || ||||||||||||||||||| |||||||| ||| | || ||||||||||||| Sbjct 480 TATGTGTCTAAATACGTTAACAAAAAGTCAGATATCGACCTTGCTGCTAAAGGTCTAGGA 421 Query 1268 AATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTT 1327 ||||||||||||||| ||||| |||||||| | || || |||||||| | || Sbjct 420 GCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTC 361 Query 1328 CGCATCAGGATGTCTCGCAACTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCG 1387 | ||||| ||| ||||||||||| ||||| ||| |||||||| | || || || Sbjct 360 AGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACG 301 Query 1388 GAAACTCTAATCCAACTGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTG 1447 || |||||||||| ||| | |||| ||||||| ||| ||||||||| | || ||| Sbjct 300 GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTG 241 Query 1448 AAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTT 1507 ||||||||||| || | |||| | |||||||||||| ||| |||| ||||||||| Sbjct 240 AAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTT 181 Query 1508 TTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAA 1567 |||| |||||||||||||||||| |||||||| ||||| |||||| || || | || Sbjct 180 TTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAA 125 Query 1568 ----ATCGGAGTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAG 1623 || || || |||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 124 AATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACT 65 Query 1624 TATGGATATTTCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACT 1681 | ||||||||||||||| | ||||| || |||||| |||||||||||| || || Sbjct 64 TTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442939006120