Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq1053 535 1e-148 >seq1053 Length=723 Score = 535 bits (592), Expect = 1e-148 Identities = 547/714 (77%), Gaps = 0/714 (0%) Strand=Plus/Minus Query 974 CACTTTCACGCAGTGCATCTTATGCGCACACTTCCTTTGGGTTCTCTCGACCCTAACTTT 1033 || || || || ||||| ||||||| ||||||||| ||| | ||||||| ||| Sbjct 720 CATTTCCATGCGGTGCACGTTATGCGGACACTTCCTACAGGTAGCGTTTACCCTAATTTT 661 Query 1034 GGTAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAAACACATGGCCTTATGGT 1093 ||| | ||| || | | || || |||||||||||||||| || |||||||||||| Sbjct 660 GGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGT 601 Query 1094 TACTCTATGCCCATCGCAGTCCGGTATTCTCAGGATGCTTTCTCTCGCGCTGGATGGCTC 1153 ||| ||||||||||||||| || || | ||||| ||||| || || |||| ||| | Sbjct 600 TACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTG 541 Query 1154 TGGCCTGTCGATACAAAGGGTGAACCCCTTAAATCCACCTCGTATATGGCTGTAGGCTTC 1213 |||| ||| ||| | || ||||| || |||||| | ||| ||||||||||| || ||| Sbjct 540 TGGCTTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTC 481 Query 1214 TACGTTGCTAAATACGTTAATAAAAAATCTGATGTTGACATAGCCGCAAAAGGCTTAGGG 1273 || || ||||||||||||| ||||| || ||| | ||| | || || ||||| |||| Sbjct 480 TATGTGTCTAAATACGTTAACAAAAAGTCAGATATCGACCTTGCTGCTAAAGGTCTAGGA 421 Query 1274 AATCAAAAATGGAACGCTACATTAAAAACGCAGATGGCTCTTTTACCAAAGAAACTATTT 1333 | || |||||||| || ||||||| || || | || | || ||||| || || Sbjct 420 GCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTC 361 Query 1334 CGAATTCGAATGAGCCGCAACTTCGGGATGAAACTACTCCCAATGACGACGCTGACCGCG 1393 |||| |||||||||||||||||||||||||| | ||| ||||||| | ||| || || Sbjct 360 AGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACG 301 Query 1394 GAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTG 1453 ||||| ||||||||||| ||| | |||||||||||| ||| ||||||||| | || ||| Sbjct 300 GAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTG 241 Query 1454 AAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGCAATCTGTAGCCGACGTT 1513 ||||||||||| || | |||| | |||||||||||| ||| |||||||||||||| Sbjct 240 AAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTT 181 Query 1514 TTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGAACA 1573 |||| |||||||||||||||||| |||||||| ||||| |||||| || || || Sbjct 180 TTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATG 121 Query 1574 ATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACGCAGAAATTAGCAAATACG 1633 || || | |||| ||| ||||||||||||||||| ||||||||||| ||| || | || Sbjct 120 ATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCG 61 Query 1634 GATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGAATTGCTGTTGCT 1687 |||||||||||||| | ||||| || || ||| ||||||||| || |||| Sbjct 60 GATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442939006120