Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001330.1
Length=6087
Score E
Sequences producing significant alignments: (Bits) Value
seq1927 381 2e-102
seq762 257 6e-65
>seq1927
Length=3296
Score = 381 bits (422), Expect = 2e-102
Identities = 677/984 (69%), Gaps = 20/984 (2%)
Strand=Plus/Minus
Query 3379 GACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTT 3435
|||||||| | || | | || || ||| |||| | ||||| || |||||| |
Sbjct 3285 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCAT 3229
Query 3436 TTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAG 3495
||| |||| | ||| |||| || || || |||||||| || ||||||||||||||
Sbjct 3228 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGAC 3169
Query 3496 CGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGC 3555
||||||||||| ||||| | | |||||| | ||||||||||||||| | |||||||||
Sbjct 3168 CGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC 3109
Query 3556 TGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAA 3615
||||| || ||||| |||||| |||||||||| ||||| || || | | || ||
Sbjct 3108 TGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA 3049
Query 3616 ATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTT 3675
||| | | | || || ||||| ||||||||| ||||||| |||||||| | |
Sbjct 3048 ATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTG 2989
Query 3676 CACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTT 3735
|| ||||| || || ||| |||||| ||||||||||||| ||||||||| || |||
Sbjct 2988 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTT 2929
Query 3736 GGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTC 3795
|| ||| |||||| ||||| || || ||||| || || ||||| |||| | | | ||
Sbjct 2928 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTC 2869
Query 3796 TGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGT 3855
||||| || || || || ||||| || || |||||| | || | || || || ||||||
Sbjct 2868 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 2809
Query 3856 CGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTC 3915
|| || || ||||| | |||||| || |||||||| ||||| || |||||||||||
Sbjct 2808 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 2749
Query 3916 ATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTT 3975
||| | ||| | || || |||| || ||||||| | ||| || || |||
Sbjct 2748 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTT 2689
Query 3976 GCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAAC 4035
| ||| | || || |||||||| ||||||||||||| | | || ||| |||
Sbjct 2688 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAAC 2629
Query 4036 TTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAA 4094
||||| || || || ||| ||| | ||| | |||||| |||| ||| || ||
Sbjct 2628 TTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 2570
Query 4095 GATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTA 4154
| |||| |||| ||| | ||||||||| | ||| || ||| | ||
Sbjct 2569 GTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTA 2510
Query 4155 TCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAA 4214
||| | | | || ||||| ||| || | || ||| || |||||| |
Sbjct 2509 TCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---A 2462
Query 4215 TCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCA 4274
| | || ||| | ||| |||| || || || ||||| || |||||||| ||
Sbjct 2461 TTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 2402
Query 4275 GTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTAC 4334
|||| | |||||||| | |||| | | ||| || | ||||||||| || |||| ||
Sbjct 2401 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 2342
Query 4335 TGTACGTGATTCCATTATGACCTC 4358
|| ||||| || ||||| ||
Sbjct 2341 CACTCGCGATTCAATCATGACTTC 2318
Score = 82.4 bits (90), Expect = 3e-12
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707
|||||||||| |||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 1144 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 1085
Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762
| |||||||||||| ||| | || ||||| || ||||||||||||||
Sbjct 1084 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 1030
>seq762
Length=1457
Score = 257 bits (284), Expect = 6e-65
Identities = 186/215 (87%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619
|||||| ||| ||||||||| | || || || ||||||||||||||||| || | ||
Sbjct 1241 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1300
Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679
||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 1301 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1360
Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1361 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1420
Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAAC 2774
|||||||||||||||||||||||||| | |||||
Sbjct 1421 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455
Score = 158 bits (174), Expect = 5e-35
Identities = 255/362 (70%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 1329 GATGACCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTCAGGACT 1388
|| ||||| || |||| ||| |||| || ||||||||| | ||||| ||||| | |
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 1389 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGC 1448
||||||| ||||| || || ||||| || || ||||| || |||||||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 1449 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACG 1506
|||| ||| |||||||||| |||| || | |||| | ||||||||||||| || |
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178
Query 1507 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGG 1566
||||| | ||||||| |||||| || || |||||||||||| ||||| ||
Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238
Query 1567 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAA 1625
|||| ||| |||||| |||| | | || | | |||||||||||| | ||
Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297
Query 1626 CCGATAGCTGTTCGCTATCAACATGACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTT 1685
|| || || |||||||| || ||||||| ||| || |||||| |||||||||||
Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357
Query 1686 GA 1687
||
Sbjct 358 GA 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19362712265196
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |