Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq1927 381 2e-102 seq762 257 6e-65 >seq1927 Length=3296 Score = 381 bits (422), Expect = 2e-102 Identities = 677/984 (69%), Gaps = 20/984 (2%) Strand=Plus/Minus Query 3379 GACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTT 3435 |||||||| | || | | || || ||| |||| | ||||| || |||||| | Sbjct 3285 GACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCAT 3229 Query 3436 TTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAG 3495 ||| |||| | ||| |||| || || || |||||||| || |||||||||||||| Sbjct 3228 TTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGAC 3169 Query 3496 CGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGC 3555 ||||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||||| Sbjct 3168 CGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC 3109 Query 3556 TGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAA 3615 ||||| || ||||| |||||| |||||||||| ||||| || || | | || || Sbjct 3108 TGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAA 3049 Query 3616 ATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTT 3675 ||| | | | || || ||||| ||||||||| ||||||| |||||||| | | Sbjct 3048 ATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTG 2989 Query 3676 CACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTT 3735 || ||||| || || ||| |||||| ||||||||||||| ||||||||| || ||| Sbjct 2988 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTT 2929 Query 3736 GGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTC 3795 || ||| |||||| ||||| || || ||||| || || ||||| |||| | | | || Sbjct 2928 GGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTC 2869 Query 3796 TGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGT 3855 ||||| || || || || ||||| || || |||||| | || | || || || |||||| Sbjct 2868 TGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGT 2809 Query 3856 CGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTC 3915 || || || ||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 2808 CGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACT 2749 Query 3916 ATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTT 3975 ||| | ||| | || || |||| || ||||||| | ||| || || ||| Sbjct 2748 ATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTT 2689 Query 3976 GCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAAC 4035 | ||| | || || |||||||| ||||||||||||| | | || ||| ||| Sbjct 2688 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAAC 2629 Query 4036 TTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAA 4094 ||||| || || || ||| ||| | ||| | |||||| |||| ||| || || Sbjct 2628 TTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 2570 Query 4095 GATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTA 4154 | |||| |||| ||| | ||||||||| | ||| || ||| | || Sbjct 2569 GTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTA 2510 Query 4155 TCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAA 4214 ||| | | | || ||||| ||| || | || ||| || |||||| | Sbjct 2509 TCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---A 2462 Query 4215 TCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCA 4274 | | || ||| | ||| |||| || || || ||||| || |||||||| || Sbjct 2461 TTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 2402 Query 4275 GTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTAC 4334 |||| | |||||||| | |||| | | ||| || | ||||||||| || |||| || Sbjct 2401 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 2342 Query 4335 TGTACGTGATTCCATTATGACCTC 4358 || ||||| || ||||| || Sbjct 2341 CACTCGCGATTCAATCATGACTTC 2318 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1144 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 1085 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 1084 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 1030 >seq762 Length=1457 Score = 257 bits (284), Expect = 6e-65 Identities = 186/215 (87%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 1241 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1300 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1301 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1360 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1361 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1420 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAAC 2774 |||||||||||||||||||||||||| | ||||| Sbjct 1421 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455 Score = 158 bits (174), Expect = 5e-35 Identities = 255/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 1329 GATGACCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTCAGGACT 1388 || ||||| || |||| ||| |||| || ||||||||| | ||||| ||||| | | Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 1389 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGC 1448 ||||||| ||||| || || ||||| || || ||||| || ||||||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 1449 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACG 1506 |||| ||| |||||||||| |||| || | |||| | ||||||||||||| || | Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178 Query 1507 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGG 1566 ||||| | ||||||| |||||| || || |||||||||||| ||||| || Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238 Query 1567 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAA 1625 |||| ||| |||||| |||| | | || | | |||||||||||| | || Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297 Query 1626 CCGATAGCTGTTCGCTATCAACATGACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTT 1685 || || || |||||||| || ||||||| ||| || |||||| ||||||||||| Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357 Query 1686 GA 1687 || Sbjct 358 GA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362712265196