Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq762 1018 0.0 seq1927 273 8e-70 >seq762 Length=1457 Score = 1018 bits (1128), Expect = 0.0 Identities = 1110/1462 (76%), Gaps = 15/1462 (1%) Strand=Plus/Plus Query 800 GATGACCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGAT 859 || ||||| ||| ||| || |||||||||||||||||| | |||||||| || |||||| Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 860 ATTGGTCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGC 919 |||||||||||||| ||| ||||||| |||||| || |||| ||| |||||||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 920 TATCAGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCA 979 |||||||||||||||||||| |||||||||||| | || ||||| |||||||| || Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCG 180 Query 980 GTGCATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTA 1039 ||||| ||||||| ||||||||| ||| | ||||||| || ||| | |||| Sbjct 181 GTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTA 240 Query 1040 CGCATCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCC 1099 |||| || || |||||||||||||||| |||||||||||||||||| ||||||| Sbjct 241 CGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCC 300 Query 1100 ATCGCAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGAC 1159 |||||||| || ||| | || ||||| || || || |||| ||| | |||||||| || Sbjct 301 ATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGAT 360 Query 1160 TCAAAGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAA 1219 | || ||||| || |||||||||||| ||||||||||| || ||||| || |||||| Sbjct 361 GCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAA 420 Query 1220 TACGTTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGG 1279 |||||||||||||| |||||||| ||| | || | ||||| ||||| |||||||||| Sbjct 421 TACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGG 480 Query 1280 AACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATG 1339 ||||| ||||| |||||||| | || | |||||||| |||||||||| ||||| Sbjct 481 AACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATG 540 Query 1340 TCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATG 1399 ||||| ||||| |||||| || | ||||| | | ||||| |||| | | || Sbjct 541 AGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATC 600 Query 1400 GAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCC 1459 |||| ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| Sbjct 601 CAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCA 660 Query 1460 AAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAA 1519 || | |||| | | || |||||||| ||| |||| ||||||||||||| ||||||| Sbjct 661 AAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAA 720 Query 1520 CCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCC 1579 ||||||||||| |||||||| ||||| |||||| || || || || || | ||| Sbjct 721 CCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCC 780 Query 1580 AACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGAT 1639 ||||| ||||||||||||||||| ||||| ||| |||||| | |||||||||||||| Sbjct 781 AACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGAT 840 Query 1640 GAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCG 1699 || | ||||| || ||| | ||||||||| || |||| ||||||||||||||| Sbjct 841 GAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCG 900 Query 1700 AAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGT 1759 |||||||||||||| |||||||||| |||||| | || ||| | |||||| | Sbjct 901 AAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCT 960 Query 1760 CTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGAC 1818 |||||||||| |||||||||||||| || |||| | ||| ||||||||||||| | || Sbjct 961 CTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGAT 1019 Query 1819 GAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAA 1878 |||||||| | | |||||| | || | || ||||||||||||| | || || | Sbjct 1020 GAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCA 1079 Query 1879 CATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCC 1938 ||||| || ||||||| | | || | ||||||| | ||||| ||||| || |||| Sbjct 1080 CATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCT 1139 Query 1939 ACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GA 1992 || ||| |||||| | ||| || ||||| | | |||| || || Sbjct 1140 GAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGA 1194 Query 1993 ATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGT 2052 | | ||| || || || ||| | || ||||| || || ||||| || ||| | || Sbjct 1195 ACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGT 1254 Query 2053 TCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTAC 2112 | | || || || || || ||||| || || | || | || || ||||||||||| Sbjct 1255 TTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTAC 1314 Query 2113 CGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTG 2171 ||||| || || ||||| || ||| | ||||||||||| ||||| || |||||||||| Sbjct 1315 TGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTG 1373 Query 2172 TCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACG 2231 | || || |||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1374 TAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATG 1433 Query 2232 TTCATCCCGTTAACATCCAAAC 2253 |||||||||| ||||| ||||| Sbjct 1434 TTCATCCCGTCAACATTCAAAC 1455 >seq1927 Length=3296 Score = 273 bits (302), Expect = 8e-70 Identities = 518/754 (69%), Gaps = 24/754 (3%) Strand=Plus/Minus Query 2917 TGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCA 2976 ||| |||| ||| || || ||| || |||| |||| | ||||| || ||| Sbjct 3280 TGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCA 3221 Query 2977 GGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTA 3036 ||| ||| ||||||| ||||| ||||| || ||| |||| ||| ||| || | | || Sbjct 3220 GGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG----ATGCCTGACCGTA 3165 Query 3037 C----GCTAACCCATCCAATATGCCTTCTGAGGATTATAAATGG---GGCGTACGTGTCG 3089 | |||||||| ||| || | | | ||| || | || | ||| | Sbjct 3164 CCGAGGCTAACCCT---AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 3108 Query 3090 CTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACA 3149 | || ||| || |||||||| || ||||| || || ||| ||| | | Sbjct 3107 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 3048 Query 3150 TGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTAC 3209 |||| ||| ||| | |||||||||||||||| || ||||| || || ||||| || | Sbjct 3047 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 2988 Query 3210 ATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTATGAAAGAGTTCG 3269 |||| || || |||||||||||||||||| ||||||| ||| |||| || | Sbjct 2987 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 2928 Query 3270 GCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTT 3329 | ||| | || || ||||| | |||||| |||||| | || ||||||||||| | | | Sbjct 2927 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 2868 Query 3330 GGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTC 3389 |||||||||||||||| || || || ||||||||| | || | || || || ||||||| Sbjct 2867 GGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTC 2808 Query 3390 GCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTAA 3449 | ||||| ||||||| || || || || || |||| ||||||||||||| || | Sbjct 2807 GTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTA 2748 Query 3450 TTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATGCACTATCT 3507 | | ||||| ||| || ||| |||||||||||| | ||| || || || || || Sbjct 2747 TGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCT 2690 Query 3508 TGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG-ATGGCTA 3566 | | ||||| || |||||||||||||||||| | ||||||| || ||||| | Sbjct 2689 TAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-A 2631 Query 3567 ACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCCGATTCTGC 3624 || |||| || |||||| | || | || || | |||| || | | || ||| Sbjct 2630 ACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCG--TCTAA 2573 Query 3625 TAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 || || || || |||||||| || ||||||||| Sbjct 2572 GAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 2539 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 1121 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 1062 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 1061 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 1002 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 1001 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 942 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 941 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 889 Score = 154 bits (170), Expect = 5e-34 Identities = 325/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 1668 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 1609 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 1608 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 1549 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1548 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 1489 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 1488 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 1430 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 1429 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 1370 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 1369 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 1310 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 1309 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 1250 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || | Sbjct 1249 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 1190 Query 5027 AC 5028 || Sbjct 1189 AC 1188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733965701170