Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001420.2
Length=5577
Score E
Sequences producing significant alignments: (Bits) Value
seq762 1018 0.0
seq1927 273 8e-70
>seq762
Length=1457
Score = 1018 bits (1128), Expect = 0.0
Identities = 1110/1462 (76%), Gaps = 15/1462 (1%)
Strand=Plus/Plus
Query 800 GATGACCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGAT 859
|| ||||| ||| ||| || |||||||||||||||||| | |||||||| || ||||||
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 860 ATTGGTCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGC 919
|||||||||||||| ||| ||||||| |||||| || |||| ||| ||||||||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 920 TATCAGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCA 979
|||||||||||||||||||| |||||||||||| | || ||||| |||||||| ||
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCG 180
Query 980 GTGCATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTA 1039
||||| ||||||| ||||||||| ||| | ||||||| || ||| | ||||
Sbjct 181 GTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTA 240
Query 1040 CGCATCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCC 1099
|||| || || |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 241 CGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCC 300
Query 1100 ATCGCAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGAC 1159
|||||||| || ||| | || ||||| || || || |||| ||| | |||||||| ||
Sbjct 301 ATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGAT 360
Query 1160 TCAAAGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAA 1219
| || ||||| || |||||||||||| ||||||||||| || ||||| || ||||||
Sbjct 361 GCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAA 420
Query 1220 TACGTTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGG 1279
|||||||||||||| |||||||| ||| | || | ||||| ||||| ||||||||||
Sbjct 421 TACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGG 480
Query 1280 AACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATG 1339
||||| ||||| |||||||| | || | |||||||| |||||||||| |||||
Sbjct 481 AACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATG 540
Query 1340 TCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATG 1399
||||| ||||| |||||| || | ||||| | | ||||| |||| | | ||
Sbjct 541 AGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATC 600
Query 1400 GAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCC 1459
|||| ||| | |||||||||||| ||| ||||||||| | || ||||||||||||||
Sbjct 601 CAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCA 660
Query 1460 AAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAA 1519
|| | |||| | | || |||||||| ||| |||| ||||||||||||| |||||||
Sbjct 661 AAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAA 720
Query 1520 CCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCC 1579
||||||||||| |||||||| ||||| |||||| || || || || || | |||
Sbjct 721 CCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCC 780
Query 1580 AACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGAT 1639
||||| ||||||||||||||||| ||||| ||| |||||| | ||||||||||||||
Sbjct 781 AACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGAT 840
Query 1640 GAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCG 1699
|| | ||||| || ||| | ||||||||| || |||| |||||||||||||||
Sbjct 841 GAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCG 900
Query 1700 AAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGT 1759
|||||||||||||| |||||||||| |||||| | || ||| | |||||| |
Sbjct 901 AAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCT 960
Query 1760 CTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGAC 1818
|||||||||| |||||||||||||| || |||| | ||| ||||||||||||| | ||
Sbjct 961 CTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGAT 1019
Query 1819 GAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAA 1878
|||||||| | | |||||| | || | || ||||||||||||| | || || |
Sbjct 1020 GAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCA 1079
Query 1879 CATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCC 1938
||||| || ||||||| | | || | ||||||| | ||||| ||||| || ||||
Sbjct 1080 CATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCT 1139
Query 1939 ACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GA 1992
|| ||| |||||| | ||| || ||||| | | |||| || ||
Sbjct 1140 GAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGA 1194
Query 1993 ATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGT 2052
| | ||| || || || ||| | || ||||| || || ||||| || ||| | ||
Sbjct 1195 ACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGT 1254
Query 2053 TCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTAC 2112
| | || || || || || ||||| || || | || | || || |||||||||||
Sbjct 1255 TTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTAC 1314
Query 2113 CGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTG 2171
||||| || || ||||| || ||| | ||||||||||| ||||| || ||||||||||
Sbjct 1315 TGACCGCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTG 1373
Query 2172 TCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACG 2231
| || || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1374 TAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATG 1433
Query 2232 TTCATCCCGTTAACATCCAAAC 2253
|||||||||| ||||| |||||
Sbjct 1434 TTCATCCCGTCAACATTCAAAC 1455
>seq1927
Length=3296
Score = 273 bits (302), Expect = 8e-70
Identities = 518/754 (69%), Gaps = 24/754 (3%)
Strand=Plus/Minus
Query 2917 TGCTGCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCA 2976
||| |||| ||| || || ||| || |||| |||| | ||||| || |||
Sbjct 3280 TGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCA 3221
Query 2977 GGGCTATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTA 3036
||| ||| ||||||| ||||| ||||| || ||| |||| ||| ||| || | | ||
Sbjct 3220 GGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG----ATGCCTGACCGTA 3165
Query 3037 C----GCTAACCCATCCAATATGCCTTCTGAGGATTATAAATGG---GGCGTACGTGTCG 3089
| |||||||| ||| || | | | ||| || | || | ||| |
Sbjct 3164 CCGAGGCTAACCCT---AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 3108
Query 3090 CTAACCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACA 3149
| || ||| || |||||||| || ||||| || || ||| ||| | |
Sbjct 3107 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 3048
Query 3150 TGACTACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTAC 3209
|||| ||| ||| | |||||||||||||||| || ||||| || || ||||| || |
Sbjct 3047 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 2988
Query 3210 ATACGGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTATGAAAGAGTTCG 3269
|||| || || |||||||||||||||||| ||||||| ||| |||| || |
Sbjct 2987 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 2928
Query 3270 GCGGTCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTT 3329
| ||| | || || ||||| | |||||| |||||| | || ||||||||||| | | |
Sbjct 2927 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 2868
Query 3330 GGGCATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTC 3389
|||||||||||||||| || || || ||||||||| | || | || || || |||||||
Sbjct 2867 GGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTC 2808
Query 3390 GCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTAA 3449
| ||||| ||||||| || || || || || |||| ||||||||||||| || |
Sbjct 2807 GTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTA 2748
Query 3450 TTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATGCACTATCT 3507
| | ||||| ||| || ||| |||||||||||| | ||| || || || || ||
Sbjct 2747 TGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCT 2690
Query 3508 TGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG-ATGGCTA 3566
| | ||||| || |||||||||||||||||| | ||||||| || ||||| |
Sbjct 2689 TAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-A 2631
Query 3567 ACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCCGATTCTGC 3624
|| |||| || |||||| | || | || || | |||| || | | || |||
Sbjct 2630 ACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCG--TCTAA 2573
Query 3625 TAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658
|| || || || |||||||| || |||||||||
Sbjct 2572 GAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 2539
Score = 163 bits (180), Expect = 1e-36
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154
|| |||||| | ||||| || || || ||||| |||||||| ||||| || ||| |
Sbjct 1121 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 1062
Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214
|| || ||||||| | ||||||| ||||| | |||||||| | || |||| ||
Sbjct 1061 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 1002
Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274
|| || ||| || |||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 1001 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 942
Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327
||||| |||||||||||||| || | || | || ||| ||||||| ||||
Sbjct 941 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 889
Score = 154 bits (170), Expect = 5e-34
Identities = 325/482 (67%), Gaps = 17/482 (4%)
Strand=Plus/Minus
Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622
||||||||| |||| ||||||||||| || || || ||||| || ||| ||| |||
Sbjct 1668 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 1609
Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682
||| ||||| |||||||| |||| ||| || || ||||| | || |||||| |
Sbjct 1608 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 1549
Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742
||| |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1548 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 1489
Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801
||| |||||| || | || || | ||||| | | | ||||| | || | |||
Sbjct 1488 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 1430
Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849
| ||| | | || | | || || ||| | | | |||| |
Sbjct 1429 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 1370
Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906
| || || || ||| | ||||||||| |||| || || ||||| || || |
Sbjct 1369 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 1310
Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966
|||| || || ||||| || ||||| || | ||||| ||||||||||||| |||||
Sbjct 1309 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 1250
Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026
| | || ||| ||||| || || | ||||| || ||||| || || ||||| || |
Sbjct 1249 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 1190
Query 5027 AC 5028
||
Sbjct 1189 AC 1188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17733965701170
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