Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq1927 435 1e-118 seq762 253 8e-64 >seq1927 Length=3296 Score = 435 bits (482), Expect = 1e-118 Identities = 687/978 (70%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 3379 ATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATC 3438 |||| | || | |||| || ||| ||| | | ||| || |||||| |||| || Sbjct 3281 ATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTC 3222 Query 3439 AGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTG 3498 || |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| | Sbjct 3221 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 3162 Query 3499 AAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCAT 3557 | ||||| ||| | |||| ||| |||||| |||||||||| |||||||| |||||| Sbjct 3161 AGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 3103 Query 3558 CTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGC 3617 || |||| |||||| ||||||| |||||||| || ||| |||| || |||||| Sbjct 3102 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 3043 Query 3618 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACT 3677 | | | || || ||||| ||||||||| |||| || |||||||| | | || ||| Sbjct 3042 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 2983 Query 3678 GAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3737 || || || ||| ||| || ||||||||||||| ||||||||| || ||||| ||| Sbjct 2982 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 2923 Query 3738 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCT 3797 |||||| ||||| || || ||||| || || ||||| |||| | || | ||||| Sbjct 2922 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 2863 Query 3798 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTT 3857 || || || || ||||| || || |||||| | || | || |||||||| || || ||| Sbjct 2862 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 2803 Query 3858 CAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3917 |||||||| | |||||| || |||||||| ||||| || ||||||||||| ||| | Sbjct 2802 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 2743 Query 3918 ACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGT 3977 ||| | ||| ||||| || ||||||| || ||| ||| || ||| | | Sbjct 2742 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 2683 Query 3978 CGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCG 4037 | ||||||||||||||| ||||||| ||||| | |||| ||| || |||||| Sbjct 2682 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 2623 Query 4038 CCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAG 4097 |||||||| |||||| |||| |||||||| |||| || | ||| ||||| Sbjct 2622 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAG 2563 Query 4098 GTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTT 4156 |||| ||| | ||||||||| | || |||||| || | ||||| | Sbjct 2562 ATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCT 2504 Query 4157 ACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCA 4216 ||||| || ||||| ||| || | || ||| || ||||||| | | Sbjct 2503 TCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AA 2455 Query 4217 GAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCT 4276 ||| || | || ||| ||| |||| ||| | ||||||||||| |||||| | Sbjct 2454 GAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 2396 Query 4277 TCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCG 4336 |||||||||| ||||| | | |||||| | ||||||||| || | || || ||| Sbjct 2395 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 2336 Query 4337 TGATTCTATTATGACCTC 4354 ||||| || ||||| || Sbjct 2335 CGATTCAATCATGACTTC 2318 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 1524 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 1467 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 1466 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 1410 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 1409 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1363 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 1362 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1307 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 1306 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1247 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 1246 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1190 >seq762 Length=1457 Score = 253 bits (280), Expect = 8e-64 Identities = 185/215 (86%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 1241 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1300 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 1301 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1360 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1361 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1420 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||| || Sbjct 1421 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455 Score = 147 bits (162), Expect = 8e-32 Identities = 256/364 (70%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 1328 GATGACCGTTTGCAGGCATTCAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACT 1387 || ||||| || |||| || |||| || ||||||||| | ||||| |||||| | | Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 1388 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGC 1447 ||||||| ||||| || || ||||| || ||| ||||| || ||||||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 1448 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACG 1505 |||| ||| |||||||||| |||| || | |||| | || |||||||||| || | Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178 Query 1506 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGG 1565 ||||| | ||||||| |||||| || || ||||||||| || ||||| | || Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238 Query 1566 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA 1623 |||| ||| |||||| |||| | | || | | |||||| ||||| |||| | | Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGG--TTACAGTA 295 Query 1624 -ACCGATAGCCGTTCGTTATCAACATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTG 1682 || || || ||||| || || ||||||| ||| || |||||||| ||||||| Sbjct 296 TGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTG 355 Query 1683 TTGA 1686 |||| Sbjct 356 TTGA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369112103988