Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq1927 435 1e-118
seq762 253 8e-64
>seq1927
Length=3296
Score = 435 bits (482), Expect = 1e-118
Identities = 687/978 (70%), Gaps = 16/978 (2%)
Strand=Plus/Minus
Query 3379 ATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATC 3438
|||| | || | |||| || ||| ||| | | ||| || |||||| |||| ||
Sbjct 3281 ATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTC 3222
Query 3439 AGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTG 3498
|| |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 3221 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 3162
Query 3499 AAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCAT 3557
| ||||| ||| | |||| ||| |||||| |||||||||| |||||||| ||||||
Sbjct 3161 AGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 3103
Query 3558 CTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGC 3617
|| |||| |||||| ||||||| |||||||| || ||| |||| || ||||||
Sbjct 3102 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 3043
Query 3618 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACT 3677
| | | || || ||||| ||||||||| |||| || |||||||| | | || |||
Sbjct 3042 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 2983
Query 3678 GAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3737
|| || || ||| ||| || ||||||||||||| ||||||||| || ||||| |||
Sbjct 2982 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 2923
Query 3738 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCT 3797
|||||| ||||| || || ||||| || || ||||| |||| | || | |||||
Sbjct 2922 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 2863
Query 3798 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTT 3857
|| || || || ||||| || || |||||| | || | || |||||||| || || |||
Sbjct 2862 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 2803
Query 3858 CAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3917
|||||||| | |||||| || |||||||| ||||| || ||||||||||| ||| |
Sbjct 2802 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 2743
Query 3918 ACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGT 3977
||| | ||| ||||| || ||||||| || ||| ||| || ||| | |
Sbjct 2742 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 2683
Query 3978 CGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCG 4037
| ||||||||||||||| ||||||| ||||| | |||| ||| || ||||||
Sbjct 2682 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 2623
Query 4038 CCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAG 4097
|||||||| |||||| |||| |||||||| |||| || | ||| |||||
Sbjct 2622 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAG 2563
Query 4098 GTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTT 4156
|||| ||| | ||||||||| | || |||||| || | ||||| |
Sbjct 2562 ATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCT 2504
Query 4157 ACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCA 4216
||||| || ||||| ||| || | || ||| || ||||||| | |
Sbjct 2503 TCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AA 2455
Query 4217 GAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCT 4276
||| || | || ||| ||| |||| ||| | ||||||||||| |||||| |
Sbjct 2454 GAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 2396
Query 4277 TCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCG 4336
|||||||||| ||||| | | |||||| | ||||||||| || | || || |||
Sbjct 2395 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 2336
Query 4337 TGATTCTATTATGACCTC 4354
||||| || ||||| ||
Sbjct 2335 CGATTCAATCATGACTTC 2318
Score = 87.8 bits (96), Expect = 7e-14
Identities = 241/360 (67%), Gaps = 32/360 (9%)
Strand=Plus/Minus
Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311
||||||||||||| | ||||| ||||| || |||||||||||| ||| | | |||
Sbjct 1524 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 1467
Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369
| || | | |||||||| ||||||| | |||||||| | || | | || |||
Sbjct 1466 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 1410
Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429
| | |||| | ||| || ||| | | | ||||||||| | ||| ||
Sbjct 1409 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1363
Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487
| ||||| |||| || || ||| || |||||||| || ||||||||
Sbjct 1362 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1307
Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547
| || || || || |||||||| || | |||||||||||||| |||| ||||||| |||
Sbjct 1306 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1247
Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604
| || | | || | | ||||| ||||||||| | ||||||||||||||
Sbjct 1246 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1190
>seq762
Length=1457
Score = 253 bits (280), Expect = 8e-64
Identities = 185/215 (86%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618
|||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | ||
Sbjct 1241 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1300
Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678
|||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 1301 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1360
Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1361 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1420
Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773
|||||||||||||||||||||||||||||||| ||
Sbjct 1421 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455
Score = 147 bits (162), Expect = 8e-32
Identities = 256/364 (70%), Gaps = 10/364 (3%)
Strand=Plus/Plus
Query 1328 GATGACCGTTTGCAGGCATTCAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACT 1387
|| ||||| || |||| || |||| || ||||||||| | ||||| |||||| | |
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 1388 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGC 1447
||||||| ||||| || || ||||| || ||| ||||| || |||||||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 1448 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACG 1505
|||| ||| |||||||||| |||| || | |||| | || |||||||||| || |
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178
Query 1506 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGG 1565
||||| | ||||||| |||||| || || ||||||||| || ||||| | ||
Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238
Query 1566 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA 1623
|||| ||| |||||| |||| | | || | | |||||| ||||| |||| | |
Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGG--TTACAGTA 295
Query 1624 -ACCGATAGCCGTTCGTTATCAACATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTG 1682
|| || || ||||| || || ||||||| ||| || |||||||| |||||||
Sbjct 296 TGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTG 355
Query 1683 TTGA 1686
||||
Sbjct 356 TTGA 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19369112103988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |