Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007817.1
Length=5486
Score E
Sequences producing significant alignments: (Bits) Value
seq762 1077 0.0
seq1927 273 8e-70
>seq762
Length=1457
Score = 1077 bits (1194), Expect = 0.0
Identities = 1122/1464 (77%), Gaps = 27/1464 (2%)
Strand=Plus/Plus
Query 800 GATGACCGCCTTAAGGATTTCTATGATAATCCCAATGCTCTCCGTGACTATTTCCGTGAT 859
|| ||||| | ||| || |||||||||||||||||| | ||||||||||| ||||||
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 860 ATTGGTCGTATGGTTCTCACTGCCGAGGGTCGTTCTGTCCATGATTCATCTTCGGACTGC 919
||||||||||||||||| ||||||||||||| | |||||||| | ||||||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 920 TATCAGTATTTTTGTGTGCCTGAGTATGGCACCCAGC--ACGGCCGTTTACATTTTCACG 977
||||||||||||||||||||||||||||| | |||| | |||||| | ||||| || |
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATG 178
Query 978 CAGTGCACCTTATGCGCACACTTCCTCTGGGTTCTATCGACCCTAACTTTGGCAAGCTGG 1037
| |||||| ||||||| ||||||||| ||| | |||||||| ||||| | ||
Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238
Query 1038 TGCGTACTAATCGGCAAATAAATAGCTTGCAAAATACATGGCCCTATGGTTACTCTATGC 1097
| || | | || || ||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 239 TACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGC 298
Query 1098 CCATCGCGGTCCGGTACTCCCAAGACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTG 1157
||||||| || || ||| | || ||||| ||||| || |||| ||| | ||||| ||||
Sbjct 299 CCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTG 358
Query 1158 ATACAAAGGGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTA 1217
|| | || || || || |||||||||||| ||||||||||| || ||||| || ||||
Sbjct 359 ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 418
Query 1218 AATACGTTAACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAAT 1277
|||||||||||||||| |||||||| ||| | || ||||||||||||| ||||||||
Sbjct 419 AATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAAT 478
Query 1278 GGAACAATTCACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGA 1337
||||||| ||||| |||||||| | || || |||||||| | || | ||||| |
Sbjct 479 GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAA 538
Query 1338 TGTCTCGCAACTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAA 1397
|| ||||||||||| ||||| ||| |||||||| | || || |||| |||
Sbjct 539 TGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAA 598
Query 1398 TCCAACTGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACG 1457
||||||| ||| | |||| ||||||| ||| ||||||||| | || |||||||||||||
Sbjct 599 TCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACG 658
Query 1458 CCAAGAAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGC 1517
| || | |||| | |||||||||||| ||| |||| ||||||||||||| |||||
Sbjct 659 CAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGC 718
Query 1518 AACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAA----ATCGGA 1573
||||||||||||| |||||||| ||||| |||||| || || | || || ||
Sbjct 719 AACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGC 774
Query 1574 GTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATT 1633
|| |||||||||||||||||||||||||| ||||| ||| |||||| | |||||||
Sbjct 775 GTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATT 834
Query 1634 TCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATT 1693
|||||||| | ||||| || |||||| |||||||||||| || || |||||||||
Sbjct 835 TCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATT 894
Query 1694 AAATCGAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGA 1753
|||||||||||||||||||| ||||||||| |||||| | || ||| | ||||
Sbjct 895 AAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGA 954
Query 1754 GAAGCTCTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCT 1812
||||||||||||| || |||||||||||||| || |||| | ||| |||| ||||||||
Sbjct 955 GAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCG 1013
Query 1813 CTCGACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTAC 1872
| || ||||| || | || |||||||| || | || ||||||||||||| | ||
Sbjct 1014 TTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATAT 1073
Query 1873 GAAGAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTA 1932
|| |||||| || ||||||| | | || | ||||| | ||||| || |||||| ||
Sbjct 1074 GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTA 1133
Query 1933 TTATC-----CACA---TCAACAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAA 1981
|||| | | | |||||| | || ||| || | | |||| | ||
Sbjct 1134 CTATCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTAC 1191
Query 1982 CGAATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATC 2041
||| | || ||| || ||| | || ||||| ||||||||||||||||| |
Sbjct 1192 TGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGC 1251
Query 2042 TGTGCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGC 2101
|| |||| | |||||||| || |||||||| | || || || || ||||||||
Sbjct 1252 CGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGC 1311
Query 2102 CACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTT 2161
||||||||||| |||||||| ||| ||||||| ||||| |||||||| |||||||
Sbjct 1312 TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTT 1371
Query 2162 TGTCGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTA 2221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTA 1431
Query 2222 TGTTCATCCCGTTAACATCCAGAC 2245
|||||||||||| ||||| || ||
Sbjct 1432 TGTTCATCCCGTCAACATTCAAAC 1455
>seq1927
Length=3296
Score = 273 bits (302), Expect = 8e-70
Identities = 505/726 (70%), Gaps = 20/726 (3%)
Strand=Plus/Minus
Query 3110 ACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAA 3169
|| |||||||| |||||||| |||||||||||||||||||| ||||| || | ||||||
Sbjct 3033 ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAA 2974
Query 3170 CGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACCTCC 3229
||||| ||||||||| || || | ||| |||| || |||||| | |||||
Sbjct 2973 CGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCT 2914
Query 3230 TATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTAT 3289
||||||| ||| ||||||||| | || | ||||||||| | | ||||| |||||||||
Sbjct 2913 TATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT 2854
Query 3290 GACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAAACA 3349
|| || || || ||||||||| | || ||||| ||||| || ||||| || ||||| ||
Sbjct 2853 GATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACC 2794
Query 3350 TTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTCGCC 3409
| || || || || || |||| ||| ||||| || ||| || | ||||| ||
Sbjct 2793 TATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCG 2734
Query 3410 GTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAGAAT 3467
|| ||| || || |||||| | ||| ||||| || || ||| || |||||
Sbjct 2733 CTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTG 2676
Query 3468 CTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGC 3526
|||| || |||||||| | || ||||||||| | | |||||| ||| |||| |||||
Sbjct 2675 CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGT 2617
Query 3527 GAAGTATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAAATT 3583
||| | || | ||||| | |||| | || | || || || ||||| || |||
Sbjct 2616 GAAATTTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAGATT 2560
Query 3584 GCCGAGGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAACGCA 3640
|| ||||| || |||||||| | || |||| | | || | | ||||| ||
Sbjct 2559 GCTGAGGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCACCTT 2503
Query 3641 CTTGACGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGTCCT 3699
||||| ||||| || ||| | || | | ||| ||| ||| || || |||| || ||
Sbjct 2502 CTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACT 2444
Query 3700 AGTTAACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAATAT 3759
|| | || | || ||| | || ||||| | || | || |||||||
Sbjct 2443 TATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAG 2384
Query 3760 GCAAACTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAATCAT 3819
|| |||||||||| ||||| ||| | || |||| || ||||| |||||||||||
Sbjct 2383 TCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCAT 2324
Query 3820 GACGTC 3825
||| ||
Sbjct 2323 GACTTC 2318
Score = 203 bits (224), Expect = 1e-48
Identities = 538/808 (67%), Gaps = 44/808 (5%)
Strand=Plus/Minus
Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197
||||||||| | || || ||||| | || | | ||| | |||||||||| | ||||
Sbjct 1997 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 1938
Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257
|| | |||||||||||| || | | | | ||| | || | || ||| |||
Sbjct 1937 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 1884
Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317
||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| |
Sbjct 1883 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 1824
Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375
|||||| | | || | | | | | ||||| |||| ||||| || | ||| ||
Sbjct 1823 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 1766
Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435
| ||| | | ||| | | ||| ||| | | ||| || |||||||| |
Sbjct 1765 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 1709
Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494
|| || | | |||||| || ||||| | |||| ||| |||||||||||| || |
Sbjct 1708 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 1652
Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554
|||||||||| || || |||||||||| || ||| ||| ||||| |||||||
Sbjct 1651 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 1592
Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610
|| ||| |||| |||| ||||||||||||| || ||| | | |||||| |||
Sbjct 1591 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 1532
Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668
|| || |||||||||||| ||||| || ||||||||||||||| || ||
Sbjct 1531 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC 1478
Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727
| | || | || | | | |||| || | | | ||| | |||| ||| ||| |
Sbjct 1477 CTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 1418
Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776
| | | | | || ||||| ||| ||| | |||| | | || | |
Sbjct 1417 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 1358
Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833
|||| | || |||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 1357 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 1298
Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893
|||| || || || || | ||||| |||||||| |||| |||||| |||||||| ||||
Sbjct 1297 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 1238
Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921
||||||| || || | || ||||||||
Sbjct 1237 TTGACGCCGGATTTGAGAATCAAAAAGA 1210
Score = 167 bits (184), Expect = 8e-38
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072
|| || || ||||| || || || ||||| ||||| |||||||| | ||| | ||
Sbjct 1118 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 1059
Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132
|| || |||| | ||||||| |||||| | |||||||| | || |||| |||||
Sbjct 1058 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 999
Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192
|| ||| || |||||||| || |||||||||||||||||||| || ||||| |||||
Sbjct 998 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 939
Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242
|| |||||||||||||||||| | || || || ||| ||||||| ||||
Sbjct 938 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17442772832385
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