Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq762 1077 0.0 seq1927 273 8e-70 >seq762 Length=1457 Score = 1077 bits (1194), Expect = 0.0 Identities = 1122/1464 (77%), Gaps = 27/1464 (2%) Strand=Plus/Plus Query 800 GATGACCGCCTTAAGGATTTCTATGATAATCCCAATGCTCTCCGTGACTATTTCCGTGAT 859 || ||||| | ||| || |||||||||||||||||| | ||||||||||| |||||| Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 860 ATTGGTCGTATGGTTCTCACTGCCGAGGGTCGTTCTGTCCATGATTCATCTTCGGACTGC 919 ||||||||||||||||| ||||||||||||| | |||||||| | |||||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 920 TATCAGTATTTTTGTGTGCCTGAGTATGGCACCCAGC--ACGGCCGTTTACATTTTCACG 977 ||||||||||||||||||||||||||||| | |||| | |||||| | ||||| || | Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATG 178 Query 978 CAGTGCACCTTATGCGCACACTTCCTCTGGGTTCTATCGACCCTAACTTTGGCAAGCTGG 1037 | |||||| ||||||| ||||||||| ||| | |||||||| ||||| | || Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238 Query 1038 TGCGTACTAATCGGCAAATAAATAGCTTGCAAAATACATGGCCCTATGGTTACTCTATGC 1097 | || | | || || ||||||||||||||||||| ||||| ||||||||| ||||| Sbjct 239 TACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGC 298 Query 1098 CCATCGCGGTCCGGTACTCCCAAGACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTG 1157 ||||||| || || ||| | || ||||| ||||| || |||| ||| | ||||| |||| Sbjct 299 CCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTG 358 Query 1158 ATACAAAGGGCGAACCTCTTAAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTA 1217 || | || || || || |||||||||||| ||||||||||| || ||||| || |||| Sbjct 359 ATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTA 418 Query 1218 AATACGTTAACAAAAAATCAGATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAAT 1277 |||||||||||||||| |||||||| ||| | || ||||||||||||| |||||||| Sbjct 419 AATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAAT 478 Query 1278 GGAACAATTCACTCAAAACCAAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGA 1337 ||||||| ||||| |||||||| | || || |||||||| | || | ||||| | Sbjct 479 GGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAA 538 Query 1338 TGTCTCGCAACTTCGGAATGAAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAA 1397 || ||||||||||| ||||| ||| |||||||| | || || |||| ||| Sbjct 539 TGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAA 598 Query 1398 TCCAACTGACCCAAGTGGGCTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACG 1457 ||||||| ||| | |||| ||||||| ||| ||||||||| | || ||||||||||||| Sbjct 599 TCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACG 658 Query 1458 CCAAGAAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGC 1517 | || | |||| | |||||||||||| ||| |||| ||||||||||||| ||||| Sbjct 659 CAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGC 718 Query 1518 AACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTTGACCCGTCAA----ATCGGA 1573 ||||||||||||| |||||||| ||||| |||||| || || | || || || Sbjct 719 AACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGC 774 Query 1574 GTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATGGATATT 1633 || |||||||||||||||||||||||||| ||||| ||| |||||| | ||||||| Sbjct 775 GTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATT 834 Query 1634 TCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATT 1693 |||||||| | ||||| || |||||| |||||||||||| || || ||||||||| Sbjct 835 TCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATT 894 Query 1694 AAATCGAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGA 1753 |||||||||||||||||||| ||||||||| |||||| | || ||| | |||| Sbjct 895 AAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGA 954 Query 1754 GAAGCTCTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCT 1812 ||||||||||||| || |||||||||||||| || |||| | ||| |||| |||||||| Sbjct 955 GAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCG 1013 Query 1813 CTCGACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTAC 1872 | || ||||| || | || |||||||| || | || ||||||||||||| | || Sbjct 1014 TTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATAT 1073 Query 1873 GAAGAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTA 1932 || |||||| || ||||||| | | || | ||||| | ||||| || |||||| || Sbjct 1074 GAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTA 1133 Query 1933 TTATC-----CACA---TCAACAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAA 1981 |||| | | | |||||| | || ||| || | | |||| | || Sbjct 1134 CTATCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTAC 1191 Query 1982 CGAATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATC 2041 ||| | || ||| || ||| | || ||||| ||||||||||||||||| | Sbjct 1192 TGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGC 1251 Query 2042 TGTGCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGC 2101 || |||| | |||||||| || |||||||| | || || || || |||||||| Sbjct 1252 CGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGC 1311 Query 2102 CACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTT 2161 ||||||||||| |||||||| ||| ||||||| ||||| |||||||| ||||||| Sbjct 1312 TACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTT 1371 Query 2162 TGTCGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTA 2221 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1372 TGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTA 1431 Query 2222 TGTTCATCCCGTTAACATCCAGAC 2245 |||||||||||| ||||| || || Sbjct 1432 TGTTCATCCCGTCAACATTCAAAC 1455 >seq1927 Length=3296 Score = 273 bits (302), Expect = 8e-70 Identities = 505/726 (70%), Gaps = 20/726 (3%) Strand=Plus/Minus Query 3110 ACGTCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAA 3169 || |||||||| |||||||| |||||||||||||||||||| ||||| || | |||||| Sbjct 3033 ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAA 2974 Query 3170 CGTGACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACCTCC 3229 ||||| ||||||||| || || | ||| |||| || |||||| | ||||| Sbjct 2973 CGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCT 2914 Query 3230 TATGACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTAT 3289 ||||||| ||| ||||||||| | || | ||||||||| | | ||||| ||||||||| Sbjct 2913 TATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT 2854 Query 3290 GACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAAACA 3349 || || || || ||||||||| | || ||||| ||||| || ||||| || ||||| || Sbjct 2853 GATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACC 2794 Query 3350 TTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTCGCC 3409 | || || || || || |||| ||| ||||| || ||| || | ||||| || Sbjct 2793 TATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCG 2734 Query 3410 GTTACTCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAGAAT 3467 || ||| || || |||||| | ||| ||||| || || ||| || ||||| Sbjct 2733 CTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTG 2676 Query 3468 CTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGC 3526 |||| || |||||||| | || ||||||||| | | |||||| ||| |||| ||||| Sbjct 2675 CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGT 2617 Query 3527 GAAGTATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAAATT 3583 ||| | || | ||||| | |||| | || | || || || ||||| || ||| Sbjct 2616 GAAATTTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAGATT 2560 Query 3584 GCCGAGGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAACGCA 3640 || ||||| || |||||||| | || |||| | | || | | ||||| || Sbjct 2559 GCTGAGGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCACCTT 2503 Query 3641 CTTGACGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGTCCT 3699 ||||| ||||| || ||| | || | | ||| ||| ||| || || |||| || || Sbjct 2502 CTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACT 2444 Query 3700 AGTTAACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAATAT 3759 || | || | || ||| | || ||||| | || | || ||||||| Sbjct 2443 TATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAG 2384 Query 3760 GCAAACTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAATCAT 3819 || |||||||||| ||||| ||| | || |||| || ||||| ||||||||||| Sbjct 2383 TCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCAT 2324 Query 3820 GACGTC 3825 ||| || Sbjct 2323 GACTTC 2318 Score = 203 bits (224), Expect = 1e-48 Identities = 538/808 (67%), Gaps = 44/808 (5%) Strand=Plus/Minus Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197 ||||||||| | || || ||||| | || | | ||| | |||||||||| | |||| Sbjct 1997 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 1938 Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257 || | |||||||||||| || | | | | ||| | || | || ||| ||| Sbjct 1937 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 1884 Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317 ||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| | Sbjct 1883 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 1824 Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375 |||||| | | || | | | | | ||||| |||| ||||| || | ||| || Sbjct 1823 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 1766 Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435 | ||| | | ||| | | ||| ||| | | ||| || |||||||| | Sbjct 1765 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 1709 Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494 || || | | |||||| || ||||| | |||| ||| |||||||||||| || | Sbjct 1708 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 1652 Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554 |||||||||| || || |||||||||| || ||| ||| ||||| ||||||| Sbjct 1651 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 1592 Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610 || ||| |||| |||| ||||||||||||| || ||| | | |||||| ||| Sbjct 1591 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 1532 Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668 || || |||||||||||| ||||| || ||||||||||||||| || || Sbjct 1531 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC 1478 Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727 | | || | || | | | |||| || | | | ||| | |||| ||| ||| | Sbjct 1477 CTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 1418 Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776 | | | | | || ||||| ||| ||| | |||| | | || | | Sbjct 1417 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 1358 Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833 |||| | || |||| ||||||||||| ||||| || |||||||||||| ||| Sbjct 1357 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 1298 Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893 |||| || || || || | ||||| |||||||| |||| |||||| |||||||| |||| Sbjct 1297 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 1238 Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921 ||||||| || || | || |||||||| Sbjct 1237 TTGACGCCGGATTTGAGAATCAAAAAGA 1210 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 1118 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 1059 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 1058 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 999 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 998 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 939 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 938 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442772832385