Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_007821.1
Length=6068
Score E
Sequences producing significant alignments: (Bits) Value
seq1927 426 6e-116
seq762 288 4e-74
>seq1927
Length=3296
Score = 426 bits (472), Expect = 6e-116
Identities = 661/933 (71%), Gaps = 16/933 (2%)
Strand=Plus/Minus
Query 3449 CCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGT 3506
|||||| ||| || ||| ||||| |||| || || || || || |||||||| ||||
Sbjct 3237 CCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 3180
Query 3507 GGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTG 3566
||||| ||||| || | || ||||| | | | | || |||| ||||| ||
Sbjct 3179 GGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATG 3120
Query 3567 GTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAA 3626
|| | ||| || | | |||| ||||||||||||||||||||||| || |||||
Sbjct 3119 GTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC 3060
Query 3627 CCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTT 3686
|||| ||| |||| |||| || ||||||||||||||| |||| || ||||
Sbjct 3059 TTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTT 3000
Query 3687 ATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTG 3746
||||| | || |||||||| || || ||||||||||||||| ||||| | |||| ||
Sbjct 2999 ATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTA 2940
Query 3747 TTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGC 3806
|| ||||||||||| || |||||||| || || || |||||||| ||||| ||||
Sbjct 2939 TTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGC 2880
Query 3807 ATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTC 3866
||| | ||||||| || |||||||||||||| || || ||||||| || | || |
Sbjct 2879 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCC 2820
Query 3867 AGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTG 3926
|||| || |||||||| || ||||| | ||| ||||| || ||||| ||||| ||||
Sbjct 2819 AGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTG 2760
Query 3927 AGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGA 3984
|||||||||||||||| || || || | || || || ||||| ||| | ||| ||
Sbjct 2759 AGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GA 2702
Query 3985 GATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGC 4044
||| || ||| | | ||||| | |||||||||||| ||| | ||| | |||||||
Sbjct 2701 GATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGT 2642
Query 4045 TTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAA 4103
|||| ||||| |||||||| || ||||| || |||| | | |||| ||||||
Sbjct 2641 TTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTG 2583
Query 4104 GTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG- 4161
| | | ||||||||||| ||||| |||||||||||||| |||| |||| |||
Sbjct 2582 ATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGT 2526
Query 4162 -CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTG 4220
||| | | ||| || |||||| || || || ||| | | || ||||
Sbjct 2525 ATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTG 2466
Query 4221 ATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTA 4280
|||| | | | ||||| || || || | || || || |||||||||
Sbjct 2465 GTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCG 2406
Query 4281 TGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGC 4340
| ||| | ||| ||||||| ||| ||| |||||| ||| ||||||| ||| |||
Sbjct 2405 TTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC 2346
Query 4341 CGACCACTCGCGACTCTATTATGACCTCTTGAT 4373
||||||||||||| || || ||||| || ||||
Sbjct 2345 CGACCACTCGCGATTCAATCATGACTTCGTGAT 2313
Score = 156 bits (172), Expect = 2e-34
Identities = 282/407 (69%), Gaps = 18/407 (4%)
Strand=Plus/Minus
Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502
||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| |
Sbjct 1330 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1271
Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559
||||||| |||| ||||||| ||| || ||| |||| ||||||| ||
Sbjct 1270 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1214
Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619
| ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | |
Sbjct 1213 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1154
Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679
| | |||||||||| |||||||| || ||||| ||| |||||||||| || |
Sbjct 1153 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 1094
Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739
| ||||| || |||||||||||| | | | || ||||||| || ||||||| ||
Sbjct 1093 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 1034
Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794
|||| | | ||||| | ||| | || | | |||| | || || |||||| |
Sbjct 1033 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 977
Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840
|||| ||||||| ||||| | |||||||| |||| || |||
Sbjct 976 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 933
>seq762
Length=1457
Score = 288 bits (318), Expect = 4e-74
Identities = 195/219 (89%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640
|||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | |
Sbjct 1239 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1298
Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700
|| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 1299 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1358
Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1418
Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGG 2799
|||||||||||||||||||||||||||||||||| ||||
Sbjct 1419 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 1457
Score = 145 bits (160), Expect = 3e-31
Identities = 252/362 (70%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 1329 GATGATCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTCAGGACT 1388
|| || || || |||| ||| |||| || ||||||||| | ||||| ||||| | |
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 1389 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGC 1448
||||||| ||||| || || ||||| || ||| ||||| || ||| |||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 1449 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATG 1506
|||| ||| |||||||||| |||| ||| |||| | || |||||||||| ||||
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATG 178
Query 1507 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGG 1566
||||| | ||||||| |||||| || || ||||||||||| ||||| ||
Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238
Query 1567 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAA 1625
|||| ||| |||||| |||| | | || | | |||||||||||| | ||
Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297
Query 1626 CCGATAGCTGTACGCTATCAACATGATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTT 1685
|| || || || ||||| || || |||| ||| || ||||||||||||||||||
Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357
Query 1686 GA 1687
||
Sbjct 358 GA 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19301913796672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |