Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq1927 426 6e-116 seq762 288 4e-74 >seq1927 Length=3296 Score = 426 bits (472), Expect = 6e-116 Identities = 661/933 (71%), Gaps = 16/933 (2%) Strand=Plus/Minus Query 3449 CCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGT 3506 |||||| ||| || ||| ||||| |||| || || || || || |||||||| |||| Sbjct 3237 CCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT 3180 Query 3507 GGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTG 3566 ||||| ||||| || | || ||||| | | | | || |||| ||||| || Sbjct 3179 GGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATG 3120 Query 3567 GTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAA 3626 || | ||| || | | |||| ||||||||||||||||||||||| || ||||| Sbjct 3119 GTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC 3060 Query 3627 CCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTT 3686 |||| ||| |||| |||| || ||||||||||||||| |||| || |||| Sbjct 3059 TTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTT 3000 Query 3687 ATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTG 3746 ||||| | || |||||||| || || ||||||||||||||| ||||| | |||| || Sbjct 2999 ATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTA 2940 Query 3747 TTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGC 3806 || ||||||||||| || |||||||| || || || |||||||| ||||| |||| Sbjct 2939 TTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGC 2880 Query 3807 ATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTC 3866 ||| | ||||||| || |||||||||||||| || || ||||||| || | || | Sbjct 2879 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCC 2820 Query 3867 AGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTG 3926 |||| || |||||||| || ||||| | ||| ||||| || ||||| ||||| |||| Sbjct 2819 AGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTG 2760 Query 3927 AGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGA 3984 |||||||||||||||| || || || | || || || ||||| ||| | ||| || Sbjct 2759 AGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GA 2702 Query 3985 GATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGC 4044 ||| || ||| | | ||||| | |||||||||||| ||| | ||| | ||||||| Sbjct 2701 GATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGT 2642 Query 4045 TTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAA 4103 |||| ||||| |||||||| || ||||| || |||| | | |||| |||||| Sbjct 2641 TTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTG 2583 Query 4104 GTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG- 4161 | | | ||||||||||| ||||| |||||||||||||| |||| |||| ||| Sbjct 2582 ATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGT 2526 Query 4162 -CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTG 4220 ||| | | ||| || |||||| || || || ||| | | || |||| Sbjct 2525 ATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTG 2466 Query 4221 ATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTA 4280 |||| | | | ||||| || || || | || || || ||||||||| Sbjct 2465 GTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCG 2406 Query 4281 TGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGC 4340 | ||| | ||| ||||||| ||| ||| |||||| ||| ||||||| ||| ||| Sbjct 2405 TTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGC 2346 Query 4341 CGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 ||||||||||||| || || ||||| || |||| Sbjct 2345 CGACCACTCGCGATTCAATCATGACTTCGTGAT 2313 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 1330 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1271 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 1270 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1214 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 1213 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1154 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 1153 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 1094 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 1093 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 1034 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 1033 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 977 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 976 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 933 >seq762 Length=1457 Score = 288 bits (318), Expect = 4e-74 Identities = 195/219 (89%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 1239 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1298 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 1299 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1358 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1359 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1418 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGG 2799 |||||||||||||||||||||||||||||||||| |||| Sbjct 1419 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 1457 Score = 145 bits (160), Expect = 3e-31 Identities = 252/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 1329 GATGATCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTCAGGACT 1388 || || || || |||| ||| |||| || ||||||||| | ||||| ||||| | | Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 1389 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGC 1448 ||||||| ||||| || || ||||| || ||| ||||| || ||| ||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 1449 TATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATG 1506 |||| ||| |||||||||| |||| ||| |||| | || |||||||||| |||| Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATG 178 Query 1507 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGG 1566 ||||| | ||||||| |||||| || || ||||||||||| ||||| || Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238 Query 1567 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAA 1625 |||| ||| |||||| |||| | | || | | |||||||||||| | || Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297 Query 1626 CCGATAGCTGTACGCTATCAACATGATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTT 1685 || || || || ||||| || || |||| ||| || |||||||||||||||||| Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357 Query 1686 GA 1687 || Sbjct 358 GA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301913796672