Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq1927 430 5e-117 seq762 242 1e-60 >seq1927 Length=3296 Score = 430 bits (476), Expect = 5e-117 Identities = 666/945 (70%), Gaps = 22/945 (2%) Strand=Plus/Minus Query 3423 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3482 || |||||| |||| |||| |||| ||||||| ||||| |||||||| |||||| Sbjct 3240 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 3181 Query 3483 TGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCG 3538 ||||||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| Sbjct 3180 TGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCG 3125 Query 3539 CTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAAC 3598 ||||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || || Sbjct 3124 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 3065 Query 3599 TAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGC 3658 | |||| || |||||| | | | || || ||||| ||||||||| |||| || Sbjct 3064 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 3005 Query 3659 CGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGA 3718 |||||||| | | |||||||| || || ||| ||| |||||||||||||| | ||| Sbjct 3004 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 2945 Query 3719 TGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGT 3778 |||||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| Sbjct 2944 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 2885 Query 3779 TATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCT 3838 |||| | | || ||||||| || || || || ||||| || || |||||| | || | Sbjct 2884 CATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTT 2825 Query 3839 CGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGT 3898 || |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || Sbjct 2824 AGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGT 2765 Query 3899 GCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTT 3958 || |||||||| ||| | ||| | ||| ||||| || ||||||| || Sbjct 2764 TCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAA 2705 Query 3959 GGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCC 4018 ||| ||| || ||| | | | ||||||||||||||| |||| || ||||| Sbjct 2704 AGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCC 2645 Query 4019 GGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGG 4078 | |||| ||| || |||||||| ||||| |||||| ||||| |||||||| ||| Sbjct 2644 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGG 2585 Query 4079 TCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTA 4138 | | || | ||| ||||| |||| ||| | ||||||||| | || || Sbjct 2584 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 2525 Query 4139 TGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTA 4197 |||| || | ||||| | |||||||| || || ||| || | || ||| Sbjct 2524 TGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------ 2472 Query 4198 CGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCT 4257 || ||||||| | |||| || | || ||| ||| |||| ||| | | Sbjct 2471 ---CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGT 2418 Query 4258 GTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTT 4317 |||||||||| |||||| | |||||||||| ||||| | | |||||| | |||| Sbjct 2417 GTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT 2358 Query 4318 ATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 |||| || | || || ||| ||||| || ||||| || |||| Sbjct 2357 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 2313 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 1329 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 1270 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 1269 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 1215 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 1214 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 1156 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 1155 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 1097 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 1096 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 1037 Query 5762 CGTCCAT 5768 |||| || Sbjct 1036 CGTCTAT 1030 >seq762 Length=1457 Score = 242 bits (268), Expect = 1e-60 Identities = 184/217 (85%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 1239 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1298 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 1299 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1358 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 1359 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1418 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||||| || Sbjct 1419 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455 Score = 163 bits (180), Expect = 1e-36 Identities = 256/362 (71%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 1328 GATGACCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACT 1387 || ||||| || |||| ||| |||| || ||||||||| | ||||| |||||| | | Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60 Query 1388 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGC 1447 ||||||| ||||| || || ||||| || ||| ||||| || ||||||| Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120 Query 1448 TATCGTTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACG 1505 |||| ||| |||||||||| |||| || | |||| | ||||||||||||| || | Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178 Query 1506 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGG 1565 ||||| | ||||||| |||||| || || ||||||||||| ||||| || Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238 Query 1566 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAA 1624 |||| ||| |||||| |||| | | || | | |||||| ||||| | || Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297 Query 1625 CCGATAGCTGTTCGCTATCAACATGACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTT 1684 || || || |||||||| || ||||||| ||| ||| |||||| ||||||||||| Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357 Query 1685 GA 1686 || Sbjct 358 GA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385111700968