Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_012868.1
Length=6094
Score E
Sequences producing significant alignments: (Bits) Value
seq1927 430 5e-117
seq762 242 1e-60
>seq1927
Length=3296
Score = 430 bits (476), Expect = 5e-117
Identities = 666/945 (70%), Gaps = 22/945 (2%)
Strand=Plus/Minus
Query 3423 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3482
|| |||||| |||| |||| |||| ||||||| ||||| |||||||| ||||||
Sbjct 3240 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 3181
Query 3483 TGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCG 3538
||||||||||| ||||| || ||||| ||| ||| ||| | | |||||| ||||
Sbjct 3180 TGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCG 3125
Query 3539 CTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAAC 3598
||||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || ||
Sbjct 3124 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 3065
Query 3599 TAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGC 3658
| |||| || |||||| | | | || || ||||| ||||||||| |||| ||
Sbjct 3064 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 3005
Query 3659 CGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGA 3718
|||||||| | | |||||||| || || ||| ||| |||||||||||||| | |||
Sbjct 3004 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 2945
Query 3719 TGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGT 3778
|||||| || ||||| ||| |||||| ||||| || || ||||| || || |||||
Sbjct 2944 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 2885
Query 3779 TATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCT 3838
|||| | | || ||||||| || || || || ||||| || || |||||| | || |
Sbjct 2884 CATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTT 2825
Query 3839 CGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGT 3898
|| |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| ||
Sbjct 2824 AGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGT 2765
Query 3899 GCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTT 3958
|| |||||||| ||| | ||| | ||| ||||| || ||||||| ||
Sbjct 2764 TCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAA 2705
Query 3959 GGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCC 4018
||| ||| || ||| | | | ||||||||||||||| |||| || |||||
Sbjct 2704 AGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCC 2645
Query 4019 GGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGG 4078
| |||| ||| || |||||||| ||||| |||||| ||||| |||||||| |||
Sbjct 2644 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGG 2585
Query 4079 TCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTA 4138
| | || | ||| ||||| |||| ||| | ||||||||| | || ||
Sbjct 2584 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 2525
Query 4139 TGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTA 4197
|||| || | ||||| | |||||||| || || ||| || | || |||
Sbjct 2524 TGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------ 2472
Query 4198 CGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCT 4257
|| ||||||| | |||| || | || ||| ||| |||| ||| | |
Sbjct 2471 ---CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGT 2418
Query 4258 GTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTT 4317
|||||||||| |||||| | |||||||||| ||||| | | |||||| | ||||
Sbjct 2417 GTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT 2358
Query 4318 ATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362
|||| || | || || ||| ||||| || ||||| || ||||
Sbjct 2357 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 2313
Score = 174 bits (192), Expect = 6e-40
Identities = 226/307 (74%), Gaps = 14/307 (5%)
Strand=Plus/Minus
Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528
|||||||| || |||||||| | || || || || |||||||| || | ||||| ||
Sbjct 1329 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 1270
Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582
|||||| |||||||||||| |||| || || || | ||| | ||||||||
Sbjct 1269 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 1215
Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641
|||||| | ||||||||||||||| || ||||| || |||||| ||||||| | |||
Sbjct 1214 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 1156
Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701
||| | ||||||||||||||||||| || || || |||||||||||||| ||
Sbjct 1155 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 1097
Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761
|| ||||| || |||||||||||| ||| | || ||||| || |||||||
Sbjct 1096 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 1037
Query 5762 CGTCCAT 5768
|||| ||
Sbjct 1036 CGTCTAT 1030
>seq762
Length=1457
Score = 242 bits (268), Expect = 1e-60
Identities = 184/217 (85%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616
|||||||| || ||| ||||| | || || || |||||||| || ||||| || | |
Sbjct 1239 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1298
Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676
| |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||
Sbjct 1299 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1358
Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736
| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1359 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1418
Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773
|||||||||||||||||||||||||||||||||| ||
Sbjct 1419 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 1455
Score = 163 bits (180), Expect = 1e-36
Identities = 256/362 (71%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 1328 GATGACCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACT 1387
|| ||||| || |||| ||| |||| || ||||||||| | ||||| |||||| | |
Sbjct 1 GACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGAT 60
Query 1388 GTTGGTCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGC 1447
||||||| ||||| || || ||||| || ||| ||||| || |||||||
Sbjct 61 ATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGC 120
Query 1448 TATCGTTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACG 1505
|||| ||| |||||||||| |||| || | |||| | ||||||||||||| || |
Sbjct 121 TATCAGTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATG 178
Query 1506 TTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGG 1565
||||| | ||||||| |||||| || || ||||||||||| ||||| ||
Sbjct 179 CGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGG 238
Query 1566 TACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAA 1624
|||| ||| |||||| |||| | | || | | |||||| ||||| | ||
Sbjct 239 TACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATG 297
Query 1625 CCGATAGCTGTTCGCTATCAACATGACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTT 1684
|| || || |||||||| || ||||||| ||| ||| |||||| |||||||||||
Sbjct 298 CCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTT 357
Query 1685 GA 1686
||
Sbjct 358 GA 359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19385111700968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |