Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_005040.1
Length=5499
Score E
Sequences producing significant alignments: (Bits) Value
seq143787 111 5e-21
seq257136 102 3e-18
>seq143787
Length=448
Score = 111 bits (122), Expect = 5e-21
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 2313 AATAAAAACAATAATTTTTCGTGGGCAGACGGAGCGGGTAAACGATTAGTTCTATGGAAC 2372
|||||||| ||||||||| | ||||| ||||| || || ||| || | ||| | |||||
Sbjct 447 AATAAAAATAATAATTTTACATGGGCTGACGGTGCAGGAAAAAGAATTGTTATTTGGAAT 388
Query 2373 GAACCAAACTATGAACAATACCATATAGAAAAAATAAAAGAACTTTTGGGGGGAGATACA 2432
||||| || || ||| | ||||| |||||||| |||||| | ||||| || ||||||
Sbjct 387 GAACCTAATTACGAAACTCATCATATTGAAAAAATGAAAGAATTATTGGGTGGTGATACA 328
Query 2433 ACAAGAATACATGTAAAATATGCAAACGACGTTAGTGTGCAAAGGGTACCCATTATTATA 2492
|| | | || ||||||||| ||| || | ||| | ||| || ||| ||
Sbjct 327 ACTCGTGTGCACGTAAAATATAAAAATGATCAACCGCTTCAAGGCCCACCTATCATTTTA 268
Query 2493 TTAACAAATAA 2503
|||||||||||
Sbjct 267 TTAACAAATAA 257
>seq257136
Length=316
Score = 102 bits (112), Expect = 3e-18
Identities = 154/215 (72%), Gaps = 12/215 (6%)
Strand=Plus/Plus
Query 2108 AATAGCAAAAGAATTACTCAACTATCAATTTGGCGATGACCCTGAAGTAGTAATTGAAT- 2166
|||||| || ||||| | ||||||||| | ||||| ||| | |||| |||
Sbjct 109 AATAGCGAATAAATTATTATTTTATCAATTTAACAATGAC---GAAAACGAAATTAAATC 165
Query 2167 --TTTTAACAACACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAGTATATG 2224
|||||||| ||| |||||| | || || |||| | |||| |||||||| | | | |
Sbjct 166 ATTTTTAACAGTACTTTATAATATAATCGATAAAAAAATTCCAAAATTAAAAATTGT--G 223
Query 2225 TATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTT 2284
||| | || || || || ||||| ||||||||||| ||||| || || || | |||
Sbjct 224 CATATATAGCGAACCGTCAGCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTT 283
Query 2285 GCTTTCA--TATGGTATGTTCGGTACAGCCAATAA 2317
||| | ||||||||||||||||| || |||||
Sbjct 284 --TTTAAATTATGGTATGTTCGGTACCGCGAATAA 316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 17433695317280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |