Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_005040.1 Length=5499 Score E Sequences producing significant alignments: (Bits) Value seq143787 111 5e-21 seq257136 102 3e-18 >seq143787 Length=448 Score = 111 bits (122), Expect = 5e-21 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2313 AATAAAAACAATAATTTTTCGTGGGCAGACGGAGCGGGTAAACGATTAGTTCTATGGAAC 2372 |||||||| ||||||||| | ||||| ||||| || || ||| || | ||| | ||||| Sbjct 447 AATAAAAATAATAATTTTACATGGGCTGACGGTGCAGGAAAAAGAATTGTTATTTGGAAT 388 Query 2373 GAACCAAACTATGAACAATACCATATAGAAAAAATAAAAGAACTTTTGGGGGGAGATACA 2432 ||||| || || ||| | ||||| |||||||| |||||| | ||||| || |||||| Sbjct 387 GAACCTAATTACGAAACTCATCATATTGAAAAAATGAAAGAATTATTGGGTGGTGATACA 328 Query 2433 ACAAGAATACATGTAAAATATGCAAACGACGTTAGTGTGCAAAGGGTACCCATTATTATA 2492 || | | || ||||||||| ||| || | ||| | ||| || ||| || Sbjct 327 ACTCGTGTGCACGTAAAATATAAAAATGATCAACCGCTTCAAGGCCCACCTATCATTTTA 268 Query 2493 TTAACAAATAA 2503 ||||||||||| Sbjct 267 TTAACAAATAA 257 >seq257136 Length=316 Score = 102 bits (112), Expect = 3e-18 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 2108 AATAGCAAAAGAATTACTCAACTATCAATTTGGCGATGACCCTGAAGTAGTAATTGAAT- 2166 |||||| || ||||| | ||||||||| | ||||| ||| | |||| ||| Sbjct 109 AATAGCGAATAAATTATTATTTTATCAATTTAACAATGAC---GAAAACGAAATTAAATC 165 Query 2167 --TTTTAACAACACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAGTATATG 2224 |||||||| ||| |||||| | || || |||| | |||| |||||||| | | | | Sbjct 166 ATTTTTAACAGTACTTTATAATATAATCGATAAAAAAATTCCAAAATTAAAAATTGT--G 223 Query 2225 TATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTT 2284 ||| | || || || || ||||| ||||||||||| ||||| || || || | ||| Sbjct 224 CATATATAGCGAACCGTCAGCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTT 283 Query 2285 GCTTTCA--TATGGTATGTTCGGTACAGCCAATAA 2317 ||| | ||||||||||||||||| || ||||| Sbjct 284 --TTTAAATTATGGTATGTTCGGTACCGCGAATAA 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17433695317280