Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_018151.1 Length=3640 Score E Sequences producing significant alignments: (Bits) Value seq110148 141 2e-30 seq94512 138 3e-29 seq112691 100 7e-18 >seq110148 Length=1493 Score = 141 bits (156), Expect = 2e-30 Identities = 389/587 (66%), Gaps = 10/587 (2%) Strand=Plus/Plus Query 606 GGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCA--CG 663 ||||||||||| || |||||||| ||||| || || | || |||||| || |||| || Sbjct 651 GGGTGTAAGGGGCCGTGTAAAACCCACACAGTCGACATTATTAAGACTGTTAATCATTCG 710 Query 664 ATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGG-TGATGAGCTAGGTCAAAGG 722 ||| | ||||| || | || || || || ||| |||||| || ||||| | Sbjct 711 GGGGC--TAACCCTGGATTGGTATCGAACATC-ACTAAGGGTGATGAACTTGGTCAGCGC 767 Query 723 GAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTG 782 || || |||| | ||| || | || | | | |||||| | ||||||| | Sbjct 768 GAGGGTAGGAGGGTTAGGATTACTAAGCTGCTTCTGAGGGGCAAGGTGTGGTTGGCTCAG 827 Query 783 AATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGA 842 |||| || || || ||| ||| ||| ||| | |||||| |||| ||||| | Sbjct 828 AATAGGGCGTCTACGCCGGGATCGAATATAGTGAAACTGTGGATTATCAAAGATAGACGC 887 Query 843 CCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAA-CCACT 901 ||||| ||||||| || || |||||||| || | || ||| |||| || | || Sbjct 888 CCGGGTACTGAACACGTGGCATTTAATGCTTTGTTTGACATGGCTGACCNAGGAGCCGAG 947 Query 902 CAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCA-CACTATGACGG 960 | ||| |||| ||||| |||||| | || |||||||||| | | ||| ||| | Sbjct 948 TACTGCTCTTGTCAAGGTGGACTACCGTGATAGGTTTATTGTTTTGAAGCAC-ATGGAGT 1006 Query 961 TAGACCTGCACGGTGGAAAGGA-TTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTT 1019 | || || || ||||||| | |||| |||| || ||| || ||| | ||| Sbjct 1007 TTGATCTCCATGGTGGAACCNACTTTTCGGGTGGATGAGGAAACATTTAATGTAATGGTT 1066 Query 1020 GAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATC 1079 ||| ||| | ||| | | |||| ||||||||| | || || ||| | |||| | Sbjct 1067 CCGATTAACTGCGATACTCTATTTACTCATGAGGATGGTGCTACTTTGGGCACTACGCTT 1126 Query 1080 CAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACT 1139 | ||||| ||||| | ||||| || || | |||| ||| ||||| ||||| Sbjct 1127 GAGAATGGAATTTTATTGTATTACGCAGTTACTAATCCCTCTCAGGAGATGCAATTAACT 1186 Query 1140 GCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAATAAAA 1186 || ||| | ||||||||| | ||| || || ||||||||||| Sbjct 1187 GCTCAGTGTAGATTGTATTACTTTGACNGTAATTCGAATTAATAAAA 1233 >seq94512 Length=2947 Score = 138 bits (152), Expect = 3e-29 Identities = 391/592 (66%), Gaps = 8/592 (1%) Strand=Plus/Plus Query 606 GGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCA--CG 663 ||||||||||| || |||||||| ||||| || || | || |||||| || |||| || Sbjct 1427 GGGTGTAAGGGGCCGTGTAAAACCCACACAGTCGACATTATTAAGACTGTTAATCATTCG 1486 Query 664 ATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGA-GGTGATGAGCTAGGTCAAAGG 722 || | | ||||| || | || || | | || | |||||||| || ||||| | Sbjct 1487 -GGGGCNTAACCCTGGATTGGTATCGAACA-TCACTAAGGGTGATGAACTTGGTCAGCGC 1544 Query 723 GAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTG 782 || || |||| | ||| || | ||| | | | |||||| | ||||||| | Sbjct 1545 GAGGGTAGGAGGGTTAGGATTACTAAGATGCTTCTGAGGGGCAAGGTGTGGTTGGCTCAG 1604 Query 783 AATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGA 842 |||| || || || ||| ||| || ||| | |||||| |||| ||||| | Sbjct 1605 AATAGGGCGTCTACGCCGGGATCGAATATAATGAAACTGTGGATTATCAAAGATAGACGC 1664 Query 843 CCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTC 902 ||||| ||||||| || || |||||||| || | || ||| |||| || || Sbjct 1665 CCGGGTACTGAACACGTGGCATTTAATGCTTTGTTTGACATGGCTGACCGGGAGCCGAGT 1724 Query 903 AGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCA-CACTATGACGGT 961 | ||| |||| ||||| |||||| | || |||||||||| | | ||| ||| | | Sbjct 1725 ACTGCTCTTGTCAAGGTGGACTACCGTGATAGGTTTATTGTTTTGAAGCAC-ATGGAGTT 1783 Query 962 AGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTTGA 1021 || || | ||||||| |||| |||| || ||| || ||| | ||| Sbjct 1784 TGATCTCTATGGTGGAACCACTTTTCGGGTGGATGAGGAAACATTTAATGTAATGGTTCC 1843 Query 1022 GATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATCCA 1081 ||| ||| | ||| | | |||| ||||||||| | || || ||| | |||| | | Sbjct 1844 GATTAACTGCGATACTCTATTTACTCATGAGGATGGTGCTACTTTGGGCACTACGCTTGA 1903 Query 1082 AAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACTGC 1141 ||||| ||||| | ||||| || || | |||| ||| ||||| ||||||| Sbjct 1904 GAATGGAATTTTATTGTATTACGCAGTTACTAATCCCTCTCAGGAGATGCAATTAACTGC 1963 Query 1142 ACAGGCTCGATTGTATTTTTATGATTCTACATC-AAATTAATAAAATTTAAT 1192 ||| | ||||||||| | ||| || || |||||||||||| |||| Sbjct 1964 TCAGTGTAGATTGTATTACTTTGACAGTAATTCGAAATTAATAAAAAATAAT 2015 Score = 132 bits (146), Expect = 1e-27 Identities = 386/587 (66%), Gaps = 10/587 (2%) Strand=Plus/Plus Query 606 GGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCA---C 662 ||||||||||| || |||||||| ||||| || || | || |||||| || ||| | Sbjct 152 GGGTGTAAGGGGCCGTGTAAAACCCACACAGTCGACATTATTAAGACTGTTAATCNATTC 211 Query 663 GATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGG-TGATGAGCTAGGTCAAAG 721 | ||| | ||||| || | || || || || ||| |||||| || ||||| | Sbjct 212 GGGGGC--TAACCCTGGATTGGTATCGAACATC-ACTAAGGGTGATGAACTTGGTCAGCG 268 Query 722 GGAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATC-TGGTTGGACG 780 || || |||| | ||| || | ||| | | | |||||| | ||||||| Sbjct 269 CGAGGGTAGGAGGGTTAGGATTACTAAGATGCTTCTGAGGGGCAAGGTNGTGGTTGGCTC 328 Query 781 TGAATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGA 840 ||||| || || || ||| ||| || ||| | |||||| |||| ||||| Sbjct 329 AGAATAGGGCGTCTACGCCGGGATCGAATATAATGAAACTGTGGATTATCAAAGATAGAC 388 Query 841 GACCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCAC 900 | ||||| ||||||| || || |||||||| || | || ||| |||| || || Sbjct 389 GCCCGGGTACTGAACACGTGGCATTTAATGCTTTGTTTGACATGGCTGACCGGGAGCCGA 448 Query 901 TCAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCA-CACTATGACG 959 | ||| |||| ||||| |||||| | || |||||||||| | | ||| ||| | Sbjct 449 GTACTGCTCTTGTCAAGGTGGACTACCGTGATAGGTTTATTGTTTTGAAGCAC-ATGGAG 507 Query 960 GTAGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTT 1019 | || || || ||||||| |||| |||| || ||| || ||| | ||| Sbjct 508 TTTGATCTCCATGGTGGAACCACTTTTCGGGTGGATGAGGAAACATTTAATGTAATGGTT 567 Query 1020 GAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATC 1079 ||| ||| | ||| | | |||| ||||||||| | || || ||| | |||| | Sbjct 568 CCGATTAACTGCGATACTCTATTTACTCATGAGGATGGTGCTACTTTGGGCACTACGCTT 627 Query 1080 CAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACT 1139 | ||||| ||||| | ||||| || || | |||| ||| ||||| ||||| Sbjct 628 GAGAATGGAATTTTATTGTATTACGCAGTTACTAATCCCTCTCAGGAGATGCAATTAACT 687 Query 1140 GCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAATAAAA 1186 || ||| | ||||||||| | ||| || || ||||||||||| Sbjct 688 GCTCAGTGTAGATTGTATTACTTTGACAGTAATTCGAATTAATAAAA 734 >seq112691 Length=949 Score = 100 bits (110), Expect = 7e-18 Identities = 229/340 (67%), Gaps = 6/340 (2%) Strand=Plus/Minus Query 606 GGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCA--CG 663 ||||||||||| || |||||||| ||||| || || | || |||||| || || | || Sbjct 576 GGGTGTAAGGGGCCGTGTAAAACCCACACAGTCGACATTATTAAGACTGTTAATAATTCG 517 Query 664 ATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGA-GGTGATGAGCTAGGTCAAAGG 722 ||| | ||||| || | || || | | || | |||||||| || ||||| | Sbjct 516 GGGGC--TAACCCTGGATTGGTATCGAACA-TCACTAAGGGTGATGAACTTGGTCAGCGC 460 Query 723 GAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTG 782 || || |||| | ||| || | ||| | | | |||||| | ||||||| | Sbjct 459 GAGGGTAGGAGGGTTAGGATTACTAAGATGCTTCTGAGGGGCAAGGTGTGGTTGGCTCAG 400 Query 783 AATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGA 842 |||| || || || ||| ||| || ||| | |||||| |||| ||||| | Sbjct 399 AATAGGGCGTCTACGCCGGGATCGAATATAATGAAACTGTGGATTATCAAAGATAGACGC 340 Query 843 CCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTC 902 ||||| ||||||| || || |||||||| || | || ||| |||| || || Sbjct 339 CCGGGTACTGAACACGTGGCATTTAATGCTTTGTTTGACATGGCTGACCGGGAGCCGAGT 280 Query 903 AGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTG 942 | ||| |||| ||||| |||||| | || |||||||||| Sbjct 279 ACTGCTCTTGTCAAGGTGGACTACCGTGATAGGTTTATTG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11520084033150