Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beta_20vulgaris_20subsp._20vulgaris_20[refseq_20GCF_5F000511025.2_20 2015-07-07] 40,246 sequences; 566,550,431 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq24602 179 2e-41 seq22174 125 4e-25 >seq24602 Length=585 Score = 179 bits (198), Expect = 2e-41 Identities = 286/406 (70%), Gaps = 7/406 (2%) Strand=Plus/Plus Query 6553 GCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTAT 6612 ||||| ||||||||||||| ||| ||||||||||| | | ||| | |||||||| | Sbjct 183 GCGCACCATCCACAGATTGGACAGCGCAAACAGCGTCTTGAGCTGCAGCGTGTTCTTCTT 242 Query 6613 CAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATG 6672 ||| || || ||||||||| | || |||||||| |||||||| || | ||| || || Sbjct 243 CAAACCCCGGTAGCGCACCTTGGTGTATCCAAACTGCCGCTTGATCACCCTGAAGGGGTG 302 Query 6673 TTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGCGCACCCGA 6732 |||||| ||| || ||||| ||||||| | |||| | ||| | | ||| | Sbjct 303 TTCCACCTTGGCTCGGATGCGGGCCTTGATCTTTTCCACTTGATCTAACAACGCGTCAAT 362 Query 6733 CACGGTGCT---CTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACG 6789 |||| | ||||||||| | ||| ||||||||||| | ||||||||||| Sbjct 363 GGGGGTGTTTTCCTTGTCCAACTCTTTGCGCTTGCCCGGGCGCATCGCCACATGCCAGGT 422 Query 6790 CACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAA 6849 || | | ||||| | || |||||||| ||| || ||||| ||||| || || Sbjct 423 GACATCC--TTCCTG-GCATCCGGGCGCTTGTGCGCGCCTTGGTAGCCTGCATCACCAAA 479 Query 6850 CACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGG 6909 | || | |||| ||||| | ||| ||||| || || |||||| |||||| Sbjct 480 GGCATCCACTTCCTCACCATGGAGCAAGCTGTTGC-CTTCAGTGACGTCGGCTACGTTGC 538 Query 6910 CGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCAC 6955 | | ||||| | ||||||||||||| ||||||||||||||||| Sbjct 539 CCGAGGTGCCAATGACGGTGTGCACCAATCCCGAGTCCGCATCCAC 584 >seq22174 Length=611 Score = 125 bits (138), Expect = 4e-25 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 6903 ACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATG 6962 |||||||| ||||| | || ||||||||||| ||||| ||| |||| ||||| ||| Sbjct 486 ACGTTGGCCGCCGTCGTCGTCACCGTGTGCACCAGGCCCGAATCCACATCGACACCGATG 545 Query 6963 TGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCA 7022 ||||| ||||||||||||| |||||| | |||||||| ||||| |||||||| || ||| Sbjct 546 TGCGCCTTCATGCCGAAATACCACTGCTCGCCTTTCTTCGTCTGATGCATCTCCGGATCA 605 Query 7023 CGCT 7026 |||| Sbjct 606 CGCT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27315626769760