Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_013116.1 Length=2166 Score E Sequences producing significant alignments: (Bits) Value seq37548 116 5e-23 >seq37548 Length=2359 Score = 116 bits (128), Expect = 5e-23 Identities = 237/348 (68%), Gaps = 13/348 (4%) Strand=Plus/Minus Query 696 TTTAAGGGGGCAGAGAATGTT--GATTGGACCGATCCTATTATTGCCCCTCTTGATACCG 753 |||||||| ||||| | ||| || ||| |||||| ||| | ||||| | |||||| Sbjct 799 TTTAAGGGAGCAGA--AGGTTACGACTGGTCCGATCTCATTGTCGCCCCCGTCGATACCA 742 Query 754 GTCGTATTACAGTCAAGTTTGATAAGACTTGGACTATGCAATCTGGCAATACTAATGGGA 813 | || | |||||||| || ||||||||| | || || ||||| | ||||| Sbjct 741 CAAGAGTTGACCTTAAGTTTGACAAAACTTGGACTCTACATTCCGGCAACGCCAATGGTC 682 Query 814 TTGTTCGGGAACGGAAATTGTGGCATCCAATGAACCACAATCTCGTGTACGATGACGACG 873 | || || ||| ||||| ||| |||| ||| | || || ||| |||||||||| Sbjct 681 TAGTCCGAGAAAGGAAACTGTTCCATCGTATGGGAAAGAACCTGACGTATGATGACGACG 622 Query 874 AATACGGAGATATTGAATCAGGCAGCTGGTTCA-----GTA-CTGATAGCAAGGCAGGTA 927 || ||| || || |||| || | | | ||| |||||| || |||| Sbjct 621 AAGTCGGCGAGCGCGAGTCAGACACGTCTTACTACACCGTAACTGATA---AGCGGGGTA 565 Query 928 TGGGAGATTATTATGTAATGGATATTATACAAGGCGGTCAGGGAGGTACGGCGTCCGACC 987 ||||||||||||| ||| |||||||||| ||| ||||| | | || | ||||| | Sbjct 564 TGGGAGATTATTACGTATTGGATATTATTCAATGCGGTACTGATGCAACAACATCCGATC 505 Query 988 TTCTTCGTATGACCGCTAATTCTACTATGTATTGGCATGAAAAGTAGG 1035 | | | ||||| ||||| |||||||| ||||| ||||| |||| Sbjct 504 TATTGAGAATGACGTTCAATTCCACTATGTACTGGCACGAAAAATAGG 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6812716400568