Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024691.1 Length=2259 Score E Sequences producing significant alignments: (Bits) Value seq37548 104 3e-19 >seq37548 Length=2359 Score = 104 bits (114), Expect = 3e-19 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 1823 CCCAAAACTCTTGCTCACTCTCAGCATTGATGATTTCAGCCCACACCCCACTAGTTGCAT 1882 |||||||||||| || |||| |||| | ||| | |||| | || ||| | Sbjct 1952 CCCAAAACTCTTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAGCGTGAG 1893 Query 1883 CCAC-TCTGCCTGCAACAGGTCGCTCGAGTCCCCCAGCAACAACATCTCCATCTTTGATT 1941 |||| || || | || | ||||| |||| ||||| || ||||| || |||||||||||| Sbjct 1892 CCACATCAGC-TCCACCTGGTCGTCCGAGCCCCCCCGCGACAACGTCACCATCTTTGATT 1834 Query 1942 GCATAATCAAACCCCTCTTCTGGTGTTCCGCGAGAAGGCGATACATTTGGGTGGCATCCT 2001 ||||| || || || | ||||| | || ||||| || || ||||| || Sbjct 1833 GCATAGTCGTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGTGATGGCCG 1774 Query 2002 TCAACATCGAATGCACGCGCGTTCCGGGTCCTATATTTGACT-CCGAAGTCGACAAAAGC 2060 || ||||| ||| | | || ||| || | | ||| || ||||| || || || Sbjct 1773 TCCACATCAAATCGTCTGGGGTCTGAGGTG-TAGAATCGACAACCAAAGTCAACGAACGC 1715 Query 2061 GTGCAGATGAAGACCCCCATCTGCGTGATTCTCTCGGCCGATGATGCATTCAGCT 2115 ||| ||||||| || ||||| || ||||||||||| || ||||| || |||||| Sbjct 1714 GTGGAGATGAACTCCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAGCT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7109893992150