Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_027636.1
Length=4501
Score E
Sequences producing significant alignments: (Bits) Value
seq25682 167 7e-38
>seq25682
Length=5559
Score = 167 bits (184), Expect = 7e-38
Identities = 359/526 (68%), Gaps = 8/526 (2%)
Strand=Plus/Minus
Query 857 GCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAGATACAGAAGCTTTTAGAA 916
|| ||| | || || || || ||| | |||||| || ||||| ||||| ||| | |||
Sbjct 5084 GCGACCTCCGCCACGATCAACCAGTTGCGGCAGAGCTTCCAGATCCAGAAACTTCTCGAA 5025
Query 917 AGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGATCTCACTTCGGCGTTATC 976
||||| || ||||| || || |||| || || || | ||| || ||||| || ||
Sbjct 5024 AGGGACGCACGTGGCGGTACCAGATACACCGAAATCCTCCGAAGCCATTTCGGAGTCATG 4965
Query 977 AGCCCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGGCGCGAGTACGCCTATCGCA 1036
|| || || || | || || || |||||||| ||||| | | || || ||| |
Sbjct 4964 TCTCCCGACGCCCGGCTCCAGCGGCCGGAGTACCTCGGCGGGGGGTCGACACCGATCCAA 4905
Query 1037 GTCAATCCAATTGCTCAGACGTCAGGCACTTCAGCAAGC-GGT-ACGACCACGCCGCTGG 1094
||||| || ||||| |||| || | |||| | ||| | ||| ||| | || || || |
Sbjct 4904 GTCAACCCCATTGCCCAGAACTCCGCCACTCC-GCAGACTGGTGACGGC-ACTCCTCTTG 4847
Query 1095 GAAC-CTTGTCTGCGATGGGAACAGCT-TTGCATCAGGGCAGCGGTTTTACTCAGTCCTT 1152
| || |||| | || ||||| || | |||| ||||| |||||| || || ||
Sbjct 4846 GCACTCTTGGC-GCTATGGGCACTGGGCTTGCTAGTGGGCATGGGTTTT-CTGCTTCATT 4789
Query 1153 CACAGAACACGGGTACGTTATTGGGCTCGTTGCTGTCCGGGCGGATTTGACCTATCAGCA 1212
|| ||||| || |||||||| | | || || || | | |||||||||
Sbjct 4788 TGTTGAGCACGGTATGGTCCTTGGGCTCATCAGCCTGCGTGCCGACCTCAACTATCAGCA 4729
Query 1213 GGGTCTTCGGAAGCTTTGGTCTCGTTCTACCCGTTATGATTACTATTTTCCTGCGTTCGC 1272
|| || || ||| | ||| || ||||| || |||||||| || |||||||||||
Sbjct 4728 AGGGCTCCGCAAGATGTGGAGCCGGAAAACCCGGTACGATTACTACTTCCCTGCGTTCGC 4669
Query 1273 GATGCTCGGTGAGCAAGCTGTTTTGAACAAGGAGATTTATTGTGATGGGTCTGCCAATGA 1332
|||||||| |||||||| || ||| |||||| || || ||||| || ||||| ||
Sbjct 4668 CATGCTCGGGGAGCAAGCCGTGCTGAGCAAGGAAATCTACTGTGACGGTACTGCCGGGGA 4609
Query 1333 CCCTCTTGTTTTTGGGTATCAGGAGCGTTGGGCTGAGTATCGTTAT 1378
| ||| || || || ||||| || ||||| ||||| || |||
Sbjct 4608 CGAGGATGTATTCGGCTACCAGGAACGGTGGGCGGAGTACCGCTAT 4563
Score = 91.5 bits (100), Expect = 4e-15
Identities = 160/229 (70%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 7 CGTAACAGGTCTGTTGATGTTCATCGTTTTGCGATGGTTCCCAAAGCGGATATTCCGCGT 66
|| |||| || || |||| ||||| || |||||| || ||||| || ||||| ||
Sbjct 243 CGCAACAAATCGGTCAATGTGCATCGCTTCGCGATGACACCGAAAGCCGACATTCCTCGG 184
Query 67 TCGTCGTTTGATAATTCAGACTACTCACAAGACTACGTTTGACGCCGGTTATTTGATTCC 126
|| | || | || |||| | ||||| || ||||| ||||| || | | ||||
Sbjct 183 TCCA-GCTTCAACATCCAGAAGTCGCACAAAACCACGTTCGACGCTGGCTGGATCGTTCC 125
Query 127 TATTTATGTTGATGAGATTCTT-CCCGGCGATACTTTTAATTTGCAGATGACTGCGTTTG 185
|| ||||| || || | |||| |||||||| || || ||| |||||| || ||
Sbjct 124 GATCTATGTCGACGA-AGTCTTGCCCGGCGACACCTTCCGCTTGTCGATGACAGCCTTCA 66
Query 186 CGCGTATGGCGACTCCGTTGTTTCCGTTGATGGATAATTTGTACATGGA 234
| || ||||||||||| | || ||| ||||||| || ||||| ||||
Sbjct 65 CCCGGCTGGCGACTCCGCTCTTCCCGCTGATGGACAACATGTACCTGGA 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14270318703410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |