Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq25682 167 7e-38 >seq25682 Length=5559 Score = 167 bits (184), Expect = 7e-38 Identities = 359/526 (68%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 857 GCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAGATACAGAAGCTTTTAGAA 916 || ||| | || || || || ||| | |||||| || ||||| ||||| ||| | ||| Sbjct 5084 GCGACCTCCGCCACGATCAACCAGTTGCGGCAGAGCTTCCAGATCCAGAAACTTCTCGAA 5025 Query 917 AGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGATCTCACTTCGGCGTTATC 976 ||||| || ||||| || || |||| || || || | ||| || ||||| || || Sbjct 5024 AGGGACGCACGTGGCGGTACCAGATACACCGAAATCCTCCGAAGCCATTTCGGAGTCATG 4965 Query 977 AGCCCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGGCGCGAGTACGCCTATCGCA 1036 || || || || | || || || |||||||| ||||| | | || || ||| | Sbjct 4964 TCTCCCGACGCCCGGCTCCAGCGGCCGGAGTACCTCGGCGGGGGGTCGACACCGATCCAA 4905 Query 1037 GTCAATCCAATTGCTCAGACGTCAGGCACTTCAGCAAGC-GGT-ACGACCACGCCGCTGG 1094 ||||| || ||||| |||| || | |||| | ||| | ||| ||| | || || || | Sbjct 4904 GTCAACCCCATTGCCCAGAACTCCGCCACTCC-GCAGACTGGTGACGGC-ACTCCTCTTG 4847 Query 1095 GAAC-CTTGTCTGCGATGGGAACAGCT-TTGCATCAGGGCAGCGGTTTTACTCAGTCCTT 1152 | || |||| | || ||||| || | |||| ||||| |||||| || || || Sbjct 4846 GCACTCTTGGC-GCTATGGGCACTGGGCTTGCTAGTGGGCATGGGTTTT-CTGCTTCATT 4789 Query 1153 CACAGAACACGGGTACGTTATTGGGCTCGTTGCTGTCCGGGCGGATTTGACCTATCAGCA 1212 || ||||| || |||||||| | | || || || | | ||||||||| Sbjct 4788 TGTTGAGCACGGTATGGTCCTTGGGCTCATCAGCCTGCGTGCCGACCTCAACTATCAGCA 4729 Query 1213 GGGTCTTCGGAAGCTTTGGTCTCGTTCTACCCGTTATGATTACTATTTTCCTGCGTTCGC 1272 || || || ||| | ||| || ||||| || |||||||| || ||||||||||| Sbjct 4728 AGGGCTCCGCAAGATGTGGAGCCGGAAAACCCGGTACGATTACTACTTCCCTGCGTTCGC 4669 Query 1273 GATGCTCGGTGAGCAAGCTGTTTTGAACAAGGAGATTTATTGTGATGGGTCTGCCAATGA 1332 |||||||| |||||||| || ||| |||||| || || ||||| || ||||| || Sbjct 4668 CATGCTCGGGGAGCAAGCCGTGCTGAGCAAGGAAATCTACTGTGACGGTACTGCCGGGGA 4609 Query 1333 CCCTCTTGTTTTTGGGTATCAGGAGCGTTGGGCTGAGTATCGTTAT 1378 | ||| || || || ||||| || ||||| ||||| || ||| Sbjct 4608 CGAGGATGTATTCGGCTACCAGGAACGGTGGGCGGAGTACCGCTAT 4563 Score = 91.5 bits (100), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 7 CGTAACAGGTCTGTTGATGTTCATCGTTTTGCGATGGTTCCCAAAGCGGATATTCCGCGT 66 || |||| || || |||| ||||| || |||||| || ||||| || ||||| || Sbjct 243 CGCAACAAATCGGTCAATGTGCATCGCTTCGCGATGACACCGAAAGCCGACATTCCTCGG 184 Query 67 TCGTCGTTTGATAATTCAGACTACTCACAAGACTACGTTTGACGCCGGTTATTTGATTCC 126 || | || | || |||| | ||||| || ||||| ||||| || | | |||| Sbjct 183 TCCA-GCTTCAACATCCAGAAGTCGCACAAAACCACGTTCGACGCTGGCTGGATCGTTCC 125 Query 127 TATTTATGTTGATGAGATTCTT-CCCGGCGATACTTTTAATTTGCAGATGACTGCGTTTG 185 || ||||| || || | |||| |||||||| || || ||| |||||| || || Sbjct 124 GATCTATGTCGACGA-AGTCTTGCCCGGCGACACCTTCCGCTTGTCGATGACAGCCTTCA 66 Query 186 CGCGTATGGCGACTCCGTTGTTTCCGTTGATGGATAATTTGTACATGGA 234 | || ||||||||||| | || ||| ||||||| || ||||| |||| Sbjct 65 CCCGGCTGGCGACTCCGCTCTTCCCGCTGATGGACAACATGTACCTGGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14270318703410