Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027645.1 Length=4631 Score E Sequences producing significant alignments: (Bits) Value seq25682 141 3e-30 >seq25682 Length=5559 Score = 141 bits (156), Expect = 3e-30 Identities = 508/783 (65%), Gaps = 15/783 (2%) Strand=Plus/Minus Query 871 GCGACGGCTGCGACTATTAACCAGCTGCGGCAGAGCTTTCAGATCCAGAAGTTGCTTGAG 930 ||||| | || || || |||||| ||||||||||||| ||||||||||| | || || Sbjct 5084 GCGACCTCCGCCACGATCAACCAGTTGCGGCAGAGCTTCCAGATCCAGAAACTTCTCGAA 5025 Query 931 CGCGATGCGCGTGGCGGCACCCGCTATACCGAGATTGTTCGTTCACACTTCGGTGTTATT 990 | || || |||||||| ||| | || ||||| || | || || ||||| || || Sbjct 5024 AGGGACGCACGTGGCGGTACCAGATACACCGAAATCCTCCGAAGCCATTTCGGAGTCATG 4965 Query 991 TCGCCGGATGCTAGGCTGCAGCGTCCGGAGTACCTTGGTGGTGGTCATTCGAT---GATT 1047 || || || || |||| ||||| ||||||||||| || || || |||| ||| Sbjct 4964 TCTCCCGACGCCCGGCTCCAGCGGCCGGAGTACCTCGGCGGGGGG---TCGACACCGATC 4908 Query 1048 TCGATGAATCCTATTGCTCAGACGCAAGGCACGGGTGCGAGTGGTACCTCCACGCCGCAG 1107 | || || ||||| |||| | ||| || |||| | ||| || | Sbjct 4907 CAAGTCAACCCCATTGCCCAGAACTCCGCCACTCCGCAGACTGGTGACGGCACTCCTCTT 4848 Query 1108 GGTAA-CTTGGCTGCTTTCGGGCATTAC-CTTGCGCCGAATCATGGTTTTACGCAGAGCT 1165 || | |||||| ||| | ||||| | ||||| ||||| ||| | | Sbjct 4847 GGCACTCTTGGC-GCTAT-GGGCACTGGGCTTGCTAGTGGGCATGGGTTTTCTGCTTCAT 4790 Query 1166 TTACCGAGCATGGTCACATCATCGGTTTGGTGGCGGTTCGTGCGGATCTGACGTATCAGC 1225 || ||||| ||| || | || | | | ||||| || || | ||||||| Sbjct 4789 TTGTTGAGCACGGTATGGTCCTTGGGCTCATCAGCCTGCGTGCCGACCTCAACTATCAGC 4730 Query 1226 AGGGCATGCGCAAGATGTGGTCTCGGTTGACTAGGTATGACTTTTATTTCCCGGTTTTTG 1285 | || | |||||||||||| ||| || |||| || | || ||||| | || | Sbjct 4729 AAGGGCTCCGCAAGATGTGGAGCCGGAAAACCCGGTACGATTACTACTTCCCTGCGTTCG 4670 Query 1286 CGATGCTTGGCGAGCAGGCTGTTTTGAACAAGGAGATTTATTGCGATGGTTCGGCCAACG 1345 | ||||| || ||||| || || ||| |||||| || || || || ||| | ||| | Sbjct 4669 CCATGCTCGGGGAGCAAGCCGTGCTGAGCAAGGAAATCTACTGTGACGGTACTGCCGGGG 4610 Query 1346 ATACTGCTGTATTTGGTTATCAGGAAAGGTGGGCTGAGTACCGCTACAACCCCTCTCAAA 1405 | | |||||| || || |||||| ||||||| ||||||||||| ||||| || | | Sbjct 4609 ACGAGGATGTATTCGGCTACCAGGAACGGTGGGCGGAGTACCGCTATAACCCGTCGAATA 4550 Query 1406 TTACCGGCCTTTTCC-GCTCTACTTATGCGACGCCGCTGGATGCTTGGCATTACGCGCAG 1464 | | || || |||| | | | | || | |||| ||||| ||||| ||||| Sbjct 4549 TCTCTGGGCTCTTCCGGAGCACCAGCTCCGGC-ACGCTCGATGCGTGGCACCTGGCGCAA 4491 Query 1465 AAGTTTACGTCGCTTCCGACACTCGCTTCGACGTTTATCCAGGACACTCCCCCTTTGTCC 1524 |||| | |||| ||| | || |||||||| || ||||| ||| || | Sbjct 4490 CGGTTTGATAACCGTCCGCTGCTCAATACGCAATTTATCCAAGAAACTCCGCCTCTGGAC 4431 Query 1525 CGCAACCTTGCGGTTGGCGCTGGGGCCAATGGCCAGCAATTGCTCCTGGACGCTTTCTTT 1584 || | ||||| || || | | ||| | || ||| | ||| | |||||| Sbjct 4430 CGGGTGTTAGCGGT--GC-CTTCGCAGACTGGGAAACAGTTGATTTGCGACACCTTCTTT 4374 Query 1585 AACATGCAAGTCGCCCGTCCGCTCCCGATGTATTCGGTCCCCGGTTTGATTGATCATTTC 1644 ||||| | | || || ||||| ||| |||| ||||| || || |||||||| || ||| Sbjct 4373 AACATCAACGCAGCTCGCCCGCTTCCGCTGTACTCGGTGCCGGGCTTGATTGACCACTTC 4314 Query 1645 TGA 1647 ||| Sbjct 4313 TGA 4311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14685710873460