Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_027647.1
Length=4199
Score E
Sequences producing significant alignments: (Bits) Value
seq56385 114 3e-22
>seq56385
Length=1869
Score = 114 bits (126), Expect = 3e-22
Identities = 278/418 (67%), Gaps = 10/418 (2%)
Strand=Plus/Plus
Query 796 ACAACAATCAATGACCTCAGGCGAGCCTTCAGGCTTCAGGAATGGCTCGaaaaaaaTGCA 855
||||| || ||||| | | || || || | | ||||||||||| || |||||||||
Sbjct 62 ACAACTATTAATGATTTACGTCGTGCATTTAAATTACAGGAATGGCTAGAGAAAAATGCA 121
Query 856 CGTGCAGGTACTCGGTACATCGAAAATATACTGGCACACTTCGGTGTGAACTCCTCAGAC 915
| | ||| || |||| | ||| ||| || || ||||| ||||| | || || ||
Sbjct 122 AGAGGAGGAACCAGGTATGTGGAATCTATCCTTGCTCACTTTGGTGTAAGGTCTTCGGAT 181
Query 916 AAACGGTTACAAAGACCGGAATACATCTGTGGACTTAAGACACCAGTAGTTATCTCGGAA 975
||||||||||||| ||||| || ||| || | || | || || |||
Sbjct 182 GCCAGGTTACAAAGACCTGAATATATTACTGGTTCAAAATCTCCTATTGTAATTAGTGAA 241
Query 976 GTACTAAATACTACAGGGGCTCCCGATGG---GCTGGCTCAAGGTAATATGGCTGGTCAT 1032
||| |||| |||||||| | ||||| || | || || |||||||| ||||||
Sbjct 242 GTATTAAACACTACAGG---TATTGATGGAGAACTACCCCAGGGAAATATGGCCGGTCAT 298
Query 1033 GGTATCGCAGCACACTCAGCAAAAGACGGATCTTATTCCTGTGAAGAACACGGACTAATC 1092
|| ||| | | | | || || || || |||| |||||||| || ||| |||
Sbjct 299 GGCATCTCTGTAGCTGGCGGTAACGATGGCTCATATTTTTGTGAAGAGCATGGATATATC 358
Query 1093 ATGGGCGTCATGTCCATTATGCCTAATACTGCATATCAACAAGGCATAC--ATAAATCTT 1150
|| ||| | ||||| ||| | || || ||| |||| || || |||| | |||||||
Sbjct 359 ATTGGCATTATGTCAATTCTTCCAAAAGCTGGATATAGCCAGGGTATACCTAAAAATCTT 418
Query 1151 GGTCTAAATTCGATCAACTGGACTACTTCTGGCCTACTTTCGCACATCTTGGCGAGCA 1208
|||| ||| || ||||| | ||||||| | || ||| || |||| || ||
Sbjct 419 --CTTAAAGCTAATCCTCTTGACTATTACTGGCCTTCATTTGCAAATATTGGTGAACA 474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13305330739140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |