Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027647.1 Length=4199 Score E Sequences producing significant alignments: (Bits) Value seq56385 114 3e-22 >seq56385 Length=1869 Score = 114 bits (126), Expect = 3e-22 Identities = 278/418 (67%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 796 ACAACAATCAATGACCTCAGGCGAGCCTTCAGGCTTCAGGAATGGCTCGaaaaaaaTGCA 855 ||||| || ||||| | | || || || | | ||||||||||| || ||||||||| Sbjct 62 ACAACTATTAATGATTTACGTCGTGCATTTAAATTACAGGAATGGCTAGAGAAAAATGCA 121 Query 856 CGTGCAGGTACTCGGTACATCGAAAATATACTGGCACACTTCGGTGTGAACTCCTCAGAC 915 | | ||| || |||| | ||| ||| || || ||||| ||||| | || || || Sbjct 122 AGAGGAGGAACCAGGTATGTGGAATCTATCCTTGCTCACTTTGGTGTAAGGTCTTCGGAT 181 Query 916 AAACGGTTACAAAGACCGGAATACATCTGTGGACTTAAGACACCAGTAGTTATCTCGGAA 975 ||||||||||||| ||||| || ||| || | || | || || ||| Sbjct 182 GCCAGGTTACAAAGACCTGAATATATTACTGGTTCAAAATCTCCTATTGTAATTAGTGAA 241 Query 976 GTACTAAATACTACAGGGGCTCCCGATGG---GCTGGCTCAAGGTAATATGGCTGGTCAT 1032 ||| |||| |||||||| | ||||| || | || || |||||||| |||||| Sbjct 242 GTATTAAACACTACAGG---TATTGATGGAGAACTACCCCAGGGAAATATGGCCGGTCAT 298 Query 1033 GGTATCGCAGCACACTCAGCAAAAGACGGATCTTATTCCTGTGAAGAACACGGACTAATC 1092 || ||| | | | | || || || || |||| |||||||| || ||| ||| Sbjct 299 GGCATCTCTGTAGCTGGCGGTAACGATGGCTCATATTTTTGTGAAGAGCATGGATATATC 358 Query 1093 ATGGGCGTCATGTCCATTATGCCTAATACTGCATATCAACAAGGCATAC--ATAAATCTT 1150 || ||| | ||||| ||| | || || ||| |||| || || |||| | ||||||| Sbjct 359 ATTGGCATTATGTCAATTCTTCCAAAAGCTGGATATAGCCAGGGTATACCTAAAAATCTT 418 Query 1151 GGTCTAAATTCGATCAACTGGACTACTTCTGGCCTACTTTCGCACATCTTGGCGAGCA 1208 |||| ||| || ||||| | ||||||| | || ||| || |||| || || Sbjct 419 --CTTAAAGCTAATCCTCTTGACTATTACTGGCCTTCATTTGCAAATATTGGTGAACA 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13305330739140