Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq25682 132 1e-27 >seq25682 Length=5559 Score = 132 bits (146), Expect = 1e-27 Identities = 329/491 (67%), Gaps = 10/491 (2%) Strand=Plus/Minus Query 901 TTTCAGATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATT 960 || ||||| || |||||||| |||||||| || ||||||||||| | || || ||||| Sbjct 5048 TTCCAGATCCAGAAACTTCTCGAAAGGGACGCACGTGGCGGTACCAGATACACCGAAATC 4989 Query 961 ATACGCTCACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATC 1020 | || ||||| || || || ||||| || || || | ||||| || |||||| || Sbjct 4988 CTCCGAAGCCATTTCGGAGTCATGTCTCCCGACGCCCGGCTCCAGCGGCCGGAGTACCTC 4929 Query 1021 GGGGGTGGATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGT---AAT 1077 || || || || || || | | || || || || |||| || | | | | Sbjct 4928 GGCGGGGGGTCGACACCGATCCAAGTCAACCCCATTGCCCAGAACTCCGCCACTCCGCAG 4869 Query 1078 GCTAGTGGAACTACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCAT 1137 || ||| || | || ||| | ||||| |||| |||||||| |||| | ||| | Sbjct 4868 ACTGGTG--ACGGC-ACTCCTCTTGGCACTCTTGGCGCTATGGGCACTGGGCTTGCTAGT 4812 Query 1138 AATCATGGCTTTACTTACTCAGCTACTGAACATGGTGTCATTC-TGGGATTAGTATCTGT 1196 ||||| ||| || ||| | ||| || ||| | | | |||| | | | | | Sbjct 4811 GGGCATGGGTTTTCTGCTTCATTTGTTGAGCACGGTATGGTCCTTGGGCTCATCAGC-CT 4753 Query 1197 ACGTGCCGATCTTACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATA 1256 |||||||| || | || |||||||| | | |||||||| || ||| || || Sbjct 4752 GCGTGCCGACCTCAACTATCAGCAAGGGCTCCGCAAGATGTGGAGCCGGAAAACCCGGTA 4693 Query 1257 CGATTTTTATTTCCCAGCATTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAAT 1316 ||||| || ||||| || || || | | || || |||||| | || | |||||||| Sbjct 4692 CGATTACTACTTCCCTGCGTTCGCCATGCTCGGGGAGCAAGCCGTGCTGAGCAAGGAAAT 4633 Query 1317 TTA-TGTTACAGGTAGCTCTGGGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCAG 1375 || ||| || |||| | ||||| | |||||||| || || || ||||| ||||| | Sbjct 4632 CTACTGTGAC-GGTACTGCCGGGGACGAGGATGTATTCGGCTACCAGGAACGGTGGGCGG 4574 Query 1376 AATACCGATAT 1386 | ||||| ||| Sbjct 4573 AGTACCGCTAT 4563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13541784743630