Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_004097.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq3 77.0 5e-11 >seq3 Length=50312079 Score = 77.0 bits (84), Expect = 5e-11 Identities = 99/136 (73%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1025 ATTACATTGTTAATTGAAATAACTCCTAAATTATCTAAATAAGACAGTACAAGGTATTTA 1084 ||||||||||||||||||||||||||||| | || || |||| || |||| | | || Sbjct 3133063 ATTACATTGTTAATTGAAATAACTCCTAATTGATTTAGATAATTCATTACATGAAACCTA 3133004 Query 1085 AATCTATTTAAATAAATCTGCCCAGAAGCTGTCGTCAATGTCGTCCAGACTTGGAAATTG 1144 |||||| || | || || | |||| | ||||| |||||||| | | |||||| Sbjct 3133003 AATCTAGATATAAAACCCTCAGCCGAAGGT---GTCAAAGTCGTCCAAAATGTGAAATTT 3132947 Query 1145 AAGAAGGCTTTGTGGA 1160 | || |||||||| Sbjct 3132946 ATCCAGCATTTGTGGA 3132931 Score = 77.0 bits (84), Expect = 5e-11 Identities = 99/136 (73%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1025 ATTACATTGTTAATTGAAATAACTCCTAAATTATCTAAATAAGACAGTACAAGGTATTTA 1084 |||||||||||||||||||||||| |||| | ||||| |||| || |||| | | || Sbjct 24514041 ATTACATTGTTAATTGAAATAACTTCTAATTGATCTAGATAACTCATTACATGAAACCTA 24513982 Query 1085 AATCTATTTAAATAAATCTGCCCAGAAGCTGTCGTCAATGTCGTCCAGACTTGGAAATTG 1144 |||||| || | || || | |||| | ||||| |||||||| | | |||||| Sbjct 24513981 AATCTAGATATAAAACCCTCAGCCGAAGGT---GTCAAAGTCGTCCAAAATGTGAAATTT 24513925 Query 1145 AAGAAGGCTTTGTGGA 1160 | || |||||||| Sbjct 24513924 ATTCAGCATTTGTGGA 24513909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8258776499196