Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= NC_006874.1
Length=2777
Score E
Sequences producing significant alignments: (Bits) Value
seq3 87.8 3e-14
>seq3
Length=50312079
Score = 87.8 bits (96), Expect = 3e-14
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 1150 CTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAGGACCT 1209
|||||||||||||| | |||||||||||||| ||||| ||||| ||| || | || |
Sbjct 24514049 CTGCCCTAATTACATTGTTAATTGAAATAACTTCTAATTGATCTAGATAACTCATTACAT 24513990
Query 1210 GAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGA 1269
||| |||||| || |||| ||| | ||| || |||||||| | |||
Sbjct 24513989 GAAACCTAAATCTAGATATAAAACCCTCAGCCGAAGGTGTCAAAGTCGTCCAAAATGTGA 24513930
Query 1270 AGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCTTATCT 1329
| || | | |||||||| |||| || | | | || || | ||| || | ||||
Sbjct 24513929 AATTTATTCAGCATTTGTGGATCCTTAGAGCTCTTCGAAGATTATTGTTAAAACAAATCT 24513870
Query 1330 GGATGTTGATGATGTCGTGGTTCATGTTGAATGGCCTT 1367
|||| || || || || | ||||||| |||||||||
Sbjct 24513869 GGATTTTTATAATATCCAGATTCATGTCAAATGGCCTT 24513832
Score = 78.8 bits (86), Expect = 2e-11
Identities = 148/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 1150 CTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAGGACCT 1209
|||||||||||||| | |||||||||||||| |||||| || || ||| | | || |
Sbjct 3133071 CTGCCCTAATTACATTGTTAATTGAAATAACTCCTAATTGATTTAGATAATTCATTACAT 3133012
Query 1210 GAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGA 1269
||| |||||| || |||| ||| | ||| || |||||||| | |||
Sbjct 3133011 GAAACCTAAATCTAGATATAAAACCCTCAGCCGAAGGTGTCAAAGTCGTCCAAAATGTGA 3132952
Query 1270 AGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCTTATCT 1329
| || | | |||||||| |||| || | | | ||| || | ||| || | ||||
Sbjct 3132951 AATTTATCCAGCATTTGTGGATCCTTAGAGCTCTTCGGAGATTATTGTTAAAACGAATCT 3132892
Query 1330 GGATGTTGATGATGTCGTGGTTCATGTTGAATGGCCTT 1367
|||| | || || || | ||||||| ||||| |||
Sbjct 3132891 GGATTTCTATAATATCCAGATTCATGTCAAATGGTCTT 3132854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8773936848780
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |