Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_006876.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq3 77.0 6e-11 >seq3 Length=50312079 Score = 77.0 bits (84), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 1150 CTGCTCTAATTACACTGTTAATTGAAATAACCCCTAATCTATCTAAATACTTTAGAACTT 1209 |||| ||||||||| |||||||||||||||| |||||| || || ||| || | || | Sbjct 3133071 CTGCCCTAATTACATTGTTAATTGAAATAACTCCTAATTGATTTAGATAATTCATTACAT 3133012 Query 1210 GAGTCCTAAATACCCTTAAGAAAAGAC---CAGTCTGAGGGTGT-AAACTCGTCCAGACC 1265 || ||||||| || | | || || ||| | || ||||| ||| ||||||| | Sbjct 3133011 GAAACCTAAAT---CTAGATATAAAACCCTCAG-CCGAAGGTGTCAAAGTCGTCCAAAAT 3132956 Query 1266 CTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAGGTTGTGGTTGAATCGT 1325 |||| || | | |||||||| |||| || | | | || || | ||| || || Sbjct 3132955 GTGAAATTTATCCAGCATTTGTGGATCCTTAGAGCTCTTCGGAGATTATTGTTAAAACGA 3132896 Query 1326 ATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGG 1363 ||||||| | ||| || || | ||||| ||||| Sbjct 3132895 ATCTGGATTTCTATAATATCCAGATTCATGTCAAATGG 3132858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745138368970