Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_009451.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq4 82.4 1e-12 >seq4 Length=35924511 Score = 82.4 bits (90), Expect = 1e-12 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 1129 AGCCTTAAACACGTTATTAATACAGATAACACCTAAATTATCTAAATAACGCAAAACTTG 1188 |||| ||| || || ||||| | ||||| ||||| | |||||||| | || || || Sbjct 4879682 AGCCCTAATTACATTGTTAATTGAAATAACTCCTAATTGATCTAAATGATCCATTACGTG 4879741 Query 1189 GGTCCTAAA----GACCCGTAAGAAACGCCCAGTCTGAGGAGTTAAACTCGTCCAGATCC 1244 |||||| || | ||| | | | || | ||| || ||| | ||||||| Sbjct 4879742 AAACCTAAATCTAGATC--TAA--ATCCCTCAACCGAAGGTGTCAAAGTTGTCCAGAAGG 4879797 Query 1245 GGAAGGTTAGCCAACATTTGTGAAGTCCCAGTGCTCTCCTCAGGTTGTGGTTGAACCGGA 1304 ||| | | ||||||||| || | || || ||||| | || || | ||| || || | Sbjct 4879798 TGAAATTGATCCAACATTTATGGATTCTTAGAGCTCTTCGCAAATTATTGTTAAAACGAA 4879857 Query 1305 TCTGGATTGTTATTATGTCGTGGTTCCGGAAGAATGGTCGGTCCAGGTGGCTTAGGATCC 1364 |||||||| ||| || || | ||| | ||||| | | || || |||| | | Sbjct 4879858 TCTGGATTTCTATAATATCCAGATTCATGTTAAATGGCCTTTGTAGATGCCTTACTACTC 4879917 Query 1365 TGAAATAGAGGGGATTTGGAACCTCCCAGATATACACGCCATTCAT 1410 ||||||| || ||||||||||| ||||| ||| | | ||| |||| Sbjct 4879918 TGAAATAAAGAGGATTTGGAACATCCCAAATAAAAATCCCACTCAT 4879963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8722752707016