Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_010294.1 Length=2604 Score E Sequences producing significant alignments: (Bits) Value seq3 80.6 4e-12 >seq3 Length=50312079 Score = 80.6 bits (88), Expect = 4e-12 Identities = 120/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 1014 GCTCTAATTACATTGTTAACTGAAATAACCCCTAAGTTGTCTAAATAAGACATTACAAGT 1073 || |||||||||||||||| ||||||||| ||||| | | || |||| ||||||| | Sbjct 3133069 GCCCTAATTACATTGTTAATTGAAATAACTCCTAATTGATTTAGATAATTCATTACATGA 3133010 Query 1074 AATTTGAATCTACTTAAATAAATCTGCCCAGAAGCTGTCGTCAAAGTCGTCCAGACTTGG 1133 || | |||||| || | || || | |||| | |||||||||||||| | | | Sbjct 3133009 AACCTAAATCTAGATATAAAACCCTCAGCCGAAGGT---GTCAAAGTCGTCCAAAATGTG 3132953 Query 1134 AAATTGAAGAAGGCTTTGTGGAGACCCAACGCTCTCCGCAGGTTGTGGTT 1183 ||||| | || |||||||| | | ||||| || || || | ||| Sbjct 3132952 AAATTTATCCAGCATTTGTGGATCCTTAGAGCTCTTCGGAGATTATTGTT 3132903 Score = 80.6 bits (88), Expect = 4e-12 Identities = 120/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 1014 GCTCTAATTACATTGTTAACTGAAATAACCCCTAAGTTGTCTAAATAAGACATTACAAGT 1073 || |||||||||||||||| ||||||||| |||| | |||| |||| ||||||| | Sbjct 24514047 GCCCTAATTACATTGTTAATTGAAATAACTTCTAATTGATCTAGATAACTCATTACATGA 24513988 Query 1074 AATTTGAATCTACTTAAATAAATCTGCCCAGAAGCTGTCGTCAAAGTCGTCCAGACTTGG 1133 || | |||||| || | || || | |||| | |||||||||||||| | | | Sbjct 24513987 AACCTAAATCTAGATATAAAACCCTCAGCCGAAGGT---GTCAAAGTCGTCCAAAATGTG 24513931 Query 1134 AAATTGAAGAAGGCTTTGTGGAGACCCAACGCTCTCCGCAGGTTGTGGTT 1183 ||||| | || |||||||| | | ||||| || || || | ||| Sbjct 24513930 AAATTTATTCAGCATTTGTGGATCCTTAGAGCTCTTCGAAGATTATTGTT 24513881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8223578304120