Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_012481.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq3 77.0 5e-11 >seq3 Length=50312079 Score = 77.0 bits (84), Expect = 5e-11 Identities = 123/176 (70%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 1004 GCACTAATTACATTGTTTATTCCAATAACGCCTATGCTATCTAAATAAGACATTACAAGT 1063 || |||||||||||||| ||| |||||| |||| || || |||| ||||||| | Sbjct 3133069 GCCCTAATTACATTGTTAATTGAAATAACTCCTAATTGATTTAGATAATTCATTACATGA 3133010 Query 1064 AATTTAAATCTAGCTAAATATCTCTGCCCAGAAGCTCTCATCGAAGTCGTCCAAACTTGG 1123 || ||||||||| || | | | || | |||| | ||| |||||||||||| | | Sbjct 3133009 AACCTAAATCTAGATATAAAACCCTCAGCCGAAGGTGTCA---AAGTCGTCCAAAATGTG 3132953 Query 1124 AAATTGAAGAAGGCTTTGTGGAGACCCAACGCTCTCCGTAGGTTGTGGTTGAACCG 1179 ||||| | || |||||||| | | ||||| || || || | ||| || || Sbjct 3132952 AAATTTATCCAGCATTTGTGGATCCTTAGAGCTCTTCGGAGATTATTGTTAAAACG 3132897 Score = 77.0 bits (84), Expect = 5e-11 Identities = 121/173 (70%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 1004 GCACTAATTACATTGTTTATTCCAATAACGCCTATGCTATCTAAATAAGACATTACAAGT 1063 || |||||||||||||| ||| |||||| ||| ||||| |||| ||||||| | Sbjct 24514047 GCCCTAATTACATTGTTAATTGAAATAACTTCTAATTGATCTAGATAACTCATTACATGA 24513988 Query 1064 AATTTAAATCTAGCTAAATATCTCTGCCCAGAAGCTCTCATCGAAGTCGTCCAAACTTGG 1123 || ||||||||| || | | | || | |||| | ||| |||||||||||| | | Sbjct 24513987 AACCTAAATCTAGATATAAAACCCTCAGCCGAAGGTGTCA---AAGTCGTCCAAAATGTG 24513931 Query 1124 AAATTGAAGAAGGCTTTGTGGAGACCCAACGCTCTCCGTAGGTTGTGGTTGAA 1176 ||||| | || |||||||| | | ||||| || || || | ||| || Sbjct 24513930 AAATTTATTCAGCATTTGTGGATCCTTAGAGCTCTTCGAAGATTATTGTTAAA 24513878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201179452708