Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq4507 268 5e-68 >seq4507 Length=1168 Score = 268 bits (296), Expect = 5e-68 Identities = 607/895 (68%), Gaps = 31/895 (3%) Strand=Plus/Minus Query 6554 CGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTATC 6613 ||| |||||||||| || || ||||||| || | | ||| |||||||| | Sbjct 1009 CGCTTCATCCACAGGTTCGATAGCGCAAACAAGGTCAGCACCTGCGCGGTGTTCTTGGCC 950 Query 6614 AAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATGT 6673 | ||| |||||||| ||| | || || |||||||||||||| || ||||| ||||| Sbjct 949 AGGCCGCGATAGCGGACCTTGGTGTAGCCGAACTGGCGCTTGATCACCCGGAATGGATGC 890 Query 6674 TCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCC--AGCTCATCGACGAGCGCACCCG 6731 ||||| || || | || ||||||| | ||| | || | ||||| | | || Sbjct 889 TCCACCTTCGCGCGCACGCTGGCCTTGAAGTGTTCCCAACGTCTTTCCCGAGCACGCTCG 830 Query 6732 ACACGGTGCTCTTGTCCAAGGC--GCGGCGTTTGCCCGGGCGTAATGCCACATGCC-AAC 6788 || | | ||| | | ||| || ||| | |||| | | | ||| || Sbjct 829 ---CGTT--TGTTGCCGAGGGCTTGCATCGT---CGAGGGCCTGGCGGCG-ATGAAGAAT 779 Query 6789 GCA-CCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCG 6847 ||| |||| | |||||| |||||||| ||||| || |||||| ||||||| Sbjct 778 GCAGCCTTGCAGGCCTGCAGTTCTTCGCGTTTGTCCGCACCGGTGTAGCCGCTATCGCCG 719 Query 6848 AACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTT 6907 |||||| | | || |||||||||| ||| | || || ||| || ||| |||||| Sbjct 718 AACACGCTGTCTTCTTTGCCATGCAGCAACGTGT-GCATCACCGTGACATCGGCGACGTT 660 Query 6908 GGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGC 6967 |||||| |||| ||| |||||||| ||| || ||||||| || |||||||| Sbjct 659 GGCGGCTGTGCAATGGACGTGGTGCACCAACCCGGAAAATTCATCCACGCCGATGTGCGC 600 Query 6968 TTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTT 7027 ||||| ||||||| |||||| || || ||||||||||| |||||||| ||||| ||| Sbjct 599 CTTCATCCCGAAATACCACTGATTGCCCTTCTTGGTCTGATGCATCTCAGGGTCGCGCGC 540 Query 7028 GCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCA 7087 | | | |||||||||||||||||||||| || ||||||| || ||||| | ||||| Sbjct 539 GTTGTCGGCATTCTTGGTCGAACTGGGCGCCGCGATCAGCGTCGCATCGACGATCGTGCC 480 Query 7088 CGTCTTTGAGCAGG---TAGCCCTT-CGCACTGAGTTGCGCGTTGACGGTCTGCAGAAAT 7143 || | ||||| | |||||| ||| | || ||||||||||| | | ||| | Sbjct 479 CGAC----CGCAGGCTCTGGCCCTTGCGCGC-CAGATGCGCGTTGACCGCTTCCAGCATC 425 Query 7144 TGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCC 7203 || |||| | || |||||||| | |||||||| ||||| || | |||| Sbjct 424 CGCGCGGCAAGGCCATGGGTCTCCAGCAGGCGCCGAAAGTTGAGAATCGTGGTCTCGTCC 365 Query 7204 GGCA-GTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTACAG 7262 || | || | | | ||| || ||| || || |||| | ||| | |||| ||| Sbjct 364 GGAACGTTGTC-CAAGCCACCGAGCTGGGCAAACCGCCGCAAGGTCGGGATCTCGTGCAG 306 Query 7263 CGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAG 7322 || |||||||||||| || ||||| | |||| |||||||| | || || |||| Sbjct 305 TGCTTCTTCCATCGCCGGATCGCTCAGCGCATACCACTGCTGCAGCAGATGAATCCGCAA 246 Query 7323 CATCGTTTCGACTGGAAACGGCTTCCGACCCGTC---GCCTTGACCGGCGCATGCGGCGC 7379 |||||| | | || |||||| |||||| | | || ||||| |||||||| Sbjct 245 CATCGTCGCCAGTGCGTACGGCTGCCGACCTGGCCGGCCCGATACCGGATAGTGCGGCGC 186 Query 7380 TATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCATCCAGAAA 7434 ||| | || | | ||||||||| ||||| | |||||||| ||||||| Sbjct 185 GATC-AGACCGAGCAGTTGCTGCCACGGAACCACCTGCTCCATCTCGGCCAGAAA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27326516294560