Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_001330.1
Length=6087
Score E
Sequences producing significant alignments: (Bits) Value
seq317663 517 4e-143
seq298749 374 3e-100
seq322525 174 6e-40
>seq317663
Length=1116
Score = 517 bits (572), Expect = 4e-143
Identities = 711/990 (72%), Gaps = 8/990 (1%)
Strand=Plus/Plus
Query 3140 TTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTG 3199
|||||||||| | || ||||| ||||| |||||||||||||| ||||| ||| | |
Sbjct 3 TTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGG 62
Query 3200 ATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGG 3259
| || ||||| ||| | |||||||| || |||||||||| | |||||||| |||| |
Sbjct 63 ACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTG 122
Query 3260 TTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGT 3319
| || |||| || || || | || |||||||| |||||||| || ||||||||| |||
Sbjct 123 TAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGT 182
Query 3320 TTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGG 3379
| ||| |||||||||||||| ||||| || |||||| | | | ||| |
Sbjct 183 TCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTG 242
Query 3380 ACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTT 3436
||||||| | || | | || || ||| |||| | ||||| || |||||| ||
Sbjct 243 ACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAA---AATCCCTAAGCATT 299
Query 3437 TGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGC 3496
|| |||| | ||| |||| || || || |||||||| || |||||||||||||| |
Sbjct 300 TGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACC 359
Query 3497 GTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCT 3556
|||||||||| ||||| | | |||||| | ||||||||||||||| | ||||||||||
Sbjct 360 GTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCT 419
Query 3557 GCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAA 3616
|||| || ||||| |||||| |||||||||| ||||| || || | | || |||
Sbjct 420 GCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA 479
Query 3617 TGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTC 3676
|| | | | || || ||||| ||||||||| ||||||| |||||||| | | |
Sbjct 480 TGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC 539
Query 3677 ACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTG 3736
| ||||| || || ||| |||||| ||||||||||||| ||||||||| || ||||
Sbjct 540 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTG 599
Query 3737 GCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCT 3796
| ||| |||||| ||||| || || ||||| || || ||||| |||| | | | |||
Sbjct 600 GAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCT 659
Query 3797 GGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTC 3856
|||| || || || || ||||| || || |||||| | || | || || || |||||||
Sbjct 660 GGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTC 719
Query 3857 GAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCA 3916
| || || ||||| | |||||| || |||||||| ||||| || ||||||||||| |
Sbjct 720 GTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTA 779
Query 3917 TGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTG 3976
|| | ||| | || || |||| || ||||||| | ||| || || |||
Sbjct 780 TGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTA 839
Query 3977 CTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACT 4036
| ||| | || || |||||||| ||||||||||||| | | || ||| ||||
Sbjct 840 ACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACT 899
Query 4037 TGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAG 4095
|||| || || || ||| ||| | ||| | |||||| |||| ||| || |||
Sbjct 900 TGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAG 958
Query 4096 ATTAAAGTTGCCGAGTCTATTTGGTATCGT 4125
|||| |||| ||| | |||||||||
Sbjct 959 TTTAAGATTGCTGAGGGTCAGTGGTATCGT 988
>seq298749
Length=646
Score = 374 bits (414), Expect = 3e-100
Identities = 321/397 (81%), Gaps = 0/397 (0%)
Strand=Plus/Minus
Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619
|||||| ||| ||||||||| | || || || ||||||||||||||||| || | ||
Sbjct 622 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 563
Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679
||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 562 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 503
Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 502 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 443
Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799
|||||||||||||||||||||||||| | ||||| || || ||| | |||||||||||
Sbjct 442 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 383
Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859
|| |||| ||||||||||| |||||||||||||| |||||||| |||||||| | |||
Sbjct 382 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 323
Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919
|||| ||| ||||| | |||||| || || | | | || || || |||||
Sbjct 322 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 263
Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956
| ||||| |||||||| ||| | ||| ||| || ||
Sbjct 262 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 226
>seq322525
Length=3476
Score = 174 bits (192), Expect = 6e-40
Identities = 280/398 (70%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352
|| ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| ||
Sbjct 2426 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2485
Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412
|| || ||||||||| | ||||| ||||| | | ||||||| ||||| ||
Sbjct 2486 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2545
Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472
|| ||||| || || ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 2546 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2605
Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530
| || | |||| | ||||||||||||| || | ||||| | ||||||| ||||
Sbjct 2606 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2663
Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590
|| || || |||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 2664 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2722
Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649
| || | | |||||||||||| | || || || || |||||||| ||
Sbjct 2723 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 2782
Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687
||||||| ||| || |||||| |||||||||||||
Sbjct 2783 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2820
Score = 82.4 bits (90), Expect = 3e-12
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707
|||||||||| |||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 1317 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 1376
Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762
| |||||||||||| ||| | || ||||| || ||||||||||||||
Sbjct 1377 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 1431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19292803464732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |