Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_007821.1
Length=6068
Score E
Sequences producing significant alignments: (Bits) Value
seq317663 489 6e-135
seq298749 466 7e-128
seq322525 165 3e-37
>seq317663
Length=1116
Score = 489 bits (542), Expect = 6e-135
Identities = 695/970 (72%), Gaps = 22/970 (2%)
Strand=Plus/Plus
Query 3188 ACTCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCC 3247
||||| ||| | || || || || || ||| | || |||||||| | || |||||
Sbjct 29 ACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCT 88
Query 3248 CCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCT 3307
|| | ||||||||||||||| |||||||| ||| ||| | || || ||||||||||||
Sbjct 89 CCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCT 148
Query 3308 CATCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCT 3367
|||||||| || |||||||| ||||||||| | || |||||| | |||||| |||| ||
Sbjct 149 CATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACT 208
Query 3368 CCTTTGGCCCCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCAG------TATCTTGCT 3421
||| | | ||||| | | || |||| ||| || || | |||||
Sbjct 209 CCTCTCCCGACTGTTAA---CACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGC 262
Query 3422 ACTATTCCGTCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACA 3479
|| ||| || || | || | |||||| ||| || ||| ||||| |||| |
Sbjct 263 ACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATA 320
Query 3480 TTTACAATAATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTA 3539
| || || || || |||||||| ||||||||| ||||| || | || ||||| |
Sbjct 321 TCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATG 380
Query 3540 ATATGGAGGGTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGA 3599
| | | || |||| ||||| |||| | ||| || | | |||| |||||||
Sbjct 381 AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 440
Query 3600 CTGCTCCGCTTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCA 3659
|||||||||||||||| || ||||| |||| ||| |||| |||| || |
Sbjct 441 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 500
Query 3660 TTGACATTATGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATT 3719
|||||||||||||| |||| || ||||||||| | || |||||||| || || |||||||
Sbjct 501 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 560
Query 3720 ACTTCATGACTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGATG 3779
|||||||| ||||| | |||| || || ||||||||||| || |||||||| |
Sbjct 561 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 620
Query 3780 CGGATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTTG 3839
| || || |||||||| ||||| |||| ||| | ||||||| || |||||||||||||
Sbjct 621 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 680
Query 3840 ACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGC 3899
| || || ||||||| || | || ||||| || |||||||| || ||||| | ||| |
Sbjct 681 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 740
Query 3900 ATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTCC 3959
|||| || ||||| ||||| |||||||||||||||||||| || || || | || |
Sbjct 741 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 800
Query 3960 GCTTCCCGCCGACT--CATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGAC 4017
| || ||||| ||| | ||| ||||| || ||| | | ||||| | ||||||
Sbjct 801 GTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGAC 858
Query 4018 TTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTA 4076
|||||| ||| | ||| | ||||||| |||| ||||| |||||||| || ||||| ||
Sbjct 859 TTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTT 917
Query 4077 ATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTC 4136
|||| | | |||| |||||| | | | ||||||||||| ||||| ||||
Sbjct 918 CTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTC 977
Query 4137 AGTGGTATCG 4146
||||||||||
Sbjct 978 AGTGGTATCG 987
>seq298749
Length=646
Score = 466 bits (516), Expect = 7e-128
Identities = 467/605 (77%), Gaps = 46/605 (8%)
Strand=Plus/Minus
Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640
|||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | |
Sbjct 624 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 565
Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700
|| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 564 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 505
Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 445
Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 444 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 385
Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 384 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 325
Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939
|||||| ||||||||||| || ||| || || || |||| ||| |||||
Sbjct 324 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 266
Query 2940 AATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAGCT 2991
|| | ||||| ||| | |||||| |||| ||||||| || | || || | |
Sbjct 265 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTT 206
Query 2992 C-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGGCG 3019
| | || || |||| |||| ||| |||||||
Sbjct 205 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 146
Query 3020 CTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---AT 3076
||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| |
Sbjct 145 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 86
Query 3077 AAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCT 3136
||||| | ||||| || | |||||| ||| || ||||| || || ||||||||
Sbjct 85 GAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 27
Query 3137 CATCT 3141
|||||
Sbjct 26 CATCT 22
>seq322525
Length=3476
Score = 165 bits (182), Expect = 3e-37
Identities = 278/398 (70%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352
|| |||||| |||| ||||| || | || | ||||| || || || |||| ||| ||
Sbjct 2426 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2485
Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412
|| || ||||||||| | ||||| ||||| | | ||||||| ||||| ||
Sbjct 2486 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2545
Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472
|| ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| |||
Sbjct 2546 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2605
Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530
| ||| |||| | || |||||||||| |||| ||||| | ||||||| ||||
Sbjct 2606 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2663
Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590
|| || || ||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 2664 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2722
Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649
| || | | |||||||||||| | || || || || || ||||| ||
Sbjct 2723 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 2782
Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687
|| |||| ||| || ||||||||||||||||||||
Sbjct 2783 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2820
Score = 156 bits (172), Expect = 2e-34
Identities = 282/407 (69%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502
||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| |
Sbjct 1131 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1190
Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559
||||||| |||| ||||||| ||| || ||| |||| ||||||| ||
Sbjct 1191 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1247
Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619
| ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | |
Sbjct 1248 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1307
Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679
| | |||||||||| |||||||| || ||||| ||| |||||||||| || |
Sbjct 1308 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 1367
Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739
| ||||| || |||||||||||| | | | || ||||||| || ||||||| ||
Sbjct 1368 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 1427
Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794
|||| | | ||||| | ||| | || | | |||| | || || |||||| |
Sbjct 1428 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 1484
Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840
|||| ||||||| ||||| | |||||||| |||| || |||
Sbjct 1485 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 1528
Score = 80.6 bits (88), Expect = 1e-11
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 4270 TTTCCAGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTA 4329
||||||||| | ||| | ||| ||||||| ||| ||| |||||| ||| ||||
Sbjct 45 TTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTA 104
Query 4330 TCGTAATATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373
||| ||| |||||||||||||||| || || ||||| || ||||
Sbjct 105 TCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19232224508224
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