Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_001998.1 Length=4529 Score E Sequences producing significant alignments: (Bits) Value seq624 89.7 1e-14 >seq624 Length=2007 Score = 89.7 bits (98), Expect = 1e-14 Identities = 239/362 (66%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 1030 CTTCTCCTGTGACGATTAATTCTCTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGA 1089 || || ||| || || ||| |||||| | |||| ||| | |||||||| |||| Sbjct 372 CTACTGCTGCTACTATCAATCAGCTTCGTCAGTCTTTTCAAATTCAAAAGCTGCTTGAGC 313 Query 1090 GAGATGCTCGTGGTGGAACAAGGTACATTGAGATTATTCGTTCCCATTTCAATGTGCAGT 1149 | || |||||||| || || |||| | ||||| || || || || || || | Sbjct 312 GGGACGCTCGTGGCGGTACTCGGTATACCGAGATAATCCGCTCACACTTTGGCGTAGCTT 253 Query 1150 CTCCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATA 1209 |||||||||| | | ||||| | |||||| | || ||| ||| |||||| | |||| Sbjct 252 CTCCAGATGCTCGCCTTCAACGCCCTGAGTATTTGGGCGGTGGTTCTACTCCTATTAATA 193 Query 1210 TTTCTCCGATTCCACAGACT-----TCCT----CAACAGACTCCACATCTCCTCAAGGAA 1260 || |||| ||| | || ||| | || || || | | || |||||||||| | Sbjct 192 TTGCTCCTATTGCTCAAACTGGTGGTACTGGTGCACAAGGCACTACTACTCCTCAAGGTA 133 Query 1261 ATCTTGCTGCTTATGGTACAGCGATTGGATCGAAGC---GAGTCTTCACAAAGTCTTTCA 1317 | || ||||| | |||||| | ||| | | || | | ||| ||| || || Sbjct 132 ACCTGGCTGCGTTTGGTACTTATA-TGGCTAAAGGCCATGGTTTTTCTCAA--TCATTTG 76 Query 1318 CAGAGCATGGTGTAATTCTTGGATTAGCCTCTGTACGTGCCGATCTCAACTATCAGCAAG 1377 ||||||||| || |||| | | |||||||| || ||||| | ||||| |||| Sbjct 75 TTGAGCATGGTCATGTTATTGGTCTCGTATCTGTACGAGCTGATCTTACTTATCAACAAG 16 Query 1378 GT 1379 || Sbjct 15 GT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14380320580080