Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq624 95.1 3e-16 >seq624 Length=2007 Score = 95.1 bits (104), Expect = 3e-16 Identities = 188/278 (68%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 1010 TATGTAGATTTAGGTTCTACTTCTCCTGTGACGATTAATTCTCTTCGTGAAGCTTTCCAA 1069 |||| ||||| | || || || ||| || || ||| |||||| | |||| ||| Sbjct 391 TATGCTGATTTGTCTGCTGCTACTGCTGCTACTATCAATCAGCTTCGTCAGTCTTTTCAA 332 Query 1070 TTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGGTACATTGAGATTATTCGT 1129 | |||||||| |||| | || ||||||||||| || |||| | ||||| || || Sbjct 331 ATTCAAAAGCTGCTTGAGCGGGACGCTCGTGGCGGTACTCGGTATACCGAGATAATCCGC 272 Query 1130 TCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAGGT 1189 || || || || ||||||||||| | | ||||| | |||||| | || ||| Sbjct 271 TCACACTTTGGCGTAGCTTCTCCAGATGCTCGCCTTCAACGCCCTGAGTATTTGGGCGGT 212 Query 1190 TCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACT-----TCCT----CAACAGAC 1240 ||| |||||| | |||||| |||| ||| | || ||| | || || || | Sbjct 211 GGTTCTACTCCTATTAATATTGCTCCTATTGCTCAAACTGGTGGTACTGGTGCACAAGGC 152 Query 1241 TCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTAC 1278 | || |||||||||| || || ||||| | |||||| Sbjct 151 ACTACTACTCCTCAAGGTAACCTGGCTGCGTTTGGTAC 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14389920260040