Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027633.1 Length=4609 Score E Sequences producing significant alignments: (Bits) Value seq624 235 2e-58 >seq624 Length=2007 Score = 235 bits (260), Expect = 2e-58 Identities = 285/388 (73%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 966 TGCTAGTACTTTGTATGCTGATTTATCTTTGGCTACTGCTGCGACTATTAATTCGCTTCG 1025 ||||| | ||| ||||||||||| ||| ||||||||||| ||||| ||| |||||| Sbjct 404 TGCTACTGGTTTATATGCTGATTTGTCTGCTGCTACTGCTGCTACTATCAATCAGCTTCG 345 Query 1026 TCAAGCTTTTCAGATTCAGAAATTGTATGAGCGTGATGCTCGTGGAGGTACGCGTTATAC 1085 ||| ||||||| ||||| || || |||||| || |||||||| ||||| || ||||| Sbjct 344 TCAGTCTTTTCAAATTCAAAAGCTGCTTGAGCGGGACGCTCGTGGCGGTACTCGGTATAC 285 Query 1086 TGAGGTACTTCGTGCTCATTTTGGTGTAGTTTCTCCTGATGCTCGTTTGCAGCGTCCTGA 1145 ||| || | || | || ||||| |||| |||||| |||||||| | || || ||||| Sbjct 284 CGAGATAATCCGCTCACACTTTGGCGTAGCTTCTCCAGATGCTCGCCTTCAACGCCCTGA 225 Query 1146 GTATTTAGGAGGTGGTTCTGTTCGTGTTATAATTAATCCTGTTGCTCAGACTTCTGCTAC 1205 |||||| || ||||||||| || | ||| ||| |||| ||||||| ||| || ||| Sbjct 224 GTATTTGGGCGGTGGTTCTACTCCTATTAATATTGCTCCTATTGCTCAAACTGGTGGTAC 165 Query 1206 TAATGAAATTGGAGGTGTTACTCCTCAAGGTAATCTTGCTGCTTATGGTATAGTTAGTTC 1265 | || | || | ||||||||||||||| || ||||| | ||||| || | Sbjct 164 TGGTGCACAAGGCACTACTACTCCTCAAGGTAACCTGGCTGCGTTTGGTACTTATATGGC 105 Query 1266 TCATGGTCATGGTTTTATTAGGTCTTTTGTTGAGCATTCGATTATTATTGGTCTTGTTAG 1325 | | || ||||||||| | || |||||||||||| | |||||||||| || Sbjct 104 TAAAGGCCATGGTTTTTCTCAATCATTTGTTGAGCATGGTCATGTTATTGGTCTCGTATC 45 Query 1326 TGTTCGTGCTGATTTGTCTTATCAGCAA 1353 ||| || |||||| | ||||||| ||| Sbjct 44 TGTACGAGCTGATCTTACTTATCAACAA 17 Score = 102 bits (112), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 102 TGGTTATTTGATTCCATTTTATGT-TGATGAGGTTTTACCTGGAGATACTTTTAATTTGA 160 ||||||| | |||| | |||||| ||| |||||||| ||||| || || |||||| | | Sbjct 1082 TGGTTATCTAGTTCC-TATTATGTGTGAGGAGGTTTTGCCTGGTGACACGTTTAATGTTA 1024 Query 161 AAGTTAGTACTTTTGCTAGGTTGTTAACTCCTATTGTTCCTATAATGGATAATATGTTTA 220 | |||| | |||| | | || ||||| || | || | ||||||||| | | Sbjct 1023 ATGTTACGATGTTTGGTCGACTGGCCACTCCGATATTCCCAGTTATGGATAATCTCCATC 964 Query 221 TGGATATTCAtttttttG--TTGTTCCTAATCGTTTGGTTTGGAACAATTGGGAGAAATT 278 |||| ||||| |||| ||||||||||||||||||| ||||||||||||| ||||| Sbjct 963 TGGAC--TCATTCTTTTTCTTTGTTCCTAATCGTTTGGTATGGAACAATTGGGTTAAATT 906 Query 279 T 279 | Sbjct 905 T 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14636312045680