Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq624 187 7e-44 seq818 86.0 2e-13 >seq624 Length=2007 Score = 187 bits (206), Expect = 7e-44 Identities = 425/632 (67%), Gaps = 12/632 (2%) Strand=Plus/Minus Query 28 CATCGTTTTGCGATGGTTCCCAAAGCGGATATTCCGCGTTCGTCGTTTGATAATTCAGAC 87 ||| | ||||| |||||||| |||||||||||||||||||| |||| || | ||| Sbjct 1164 CATAGCTTTGCTATGGTTCCTAAAGCGGATATTCCGCGTTCTAAGTTTTCTA-TGGAGAA 1106 Query 88 TACTCACAAGACTACGTTTGACGCCGGTTATTTGATTCCTATTTATGT-TGATGAGATTC 146 || | || || || ||||| |||||| | |||||||| |||| ||| ||| || Sbjct 1105 AACGCTTAA-ACCACTTTTGATAGTGGTTATCTAGTTCCTATT-ATGTGTGAGGAGGTTT 1048 Query 147 TTCCCGGCGATACTTTTAATTTGCAGATGACTGCGTTTGCGCGTATGGCGACTCCGTTGT 206 | || || || || |||||| | | | || ||||| || |||| |||||| | | Sbjct 1047 TGCCTGGTGACACGTTTAATGTTAATGTTACGATGTTTGGTCGACTGGCCACTCCGATAT 988 Query 207 TTCCGTTGATGGATAATTTGTACATGGATTCGttttttttCTTTGTTCCGAATCGTTTGG 266 | || | ||||||||| | | |||| || || |||||||||||||| |||||||||| Sbjct 987 TCCCAGTTATGGATAATCTCCATCTGGACTCATTCTTTTTCTTTGTTCCTAATCGTTTGG 928 Query 267 TTTGGATTCATTGGAAGCAGTTCATGGGTGAGCAGGATAATCCTGGTGATTCGATTTCTT 326 | |||| ||||| | || ||||| |||||||||||||||| ||| ||||| | Sbjct 927 TATGGAACAATTGGGTTAAATTTATGGGGGAGCAGGATAATCCTGCCGATAGTATTTCCT 868 Query 327 ACACTGTTCCT-ACGATGACTACGCCTGCCTCGGGTTATACCCCTGGTAATTTGTTCGAT 385 || || | ||| | | | | | || ||| |||||| | |||| || || Sbjct 867 ACTCTATCCCTCAACAAG-TTTCACCAGCCGGAGGTTATGCAGTTGGTTCACTGCAAGAC 809 Query 386 TATTTTGGTCTGCCTACTATTGGTCAGGTCGGAGGTGGGAATACGGTTGTTCATAATTCG 445 |||||||| ||||| ||| || || || || | | ||||||||| || | || Sbjct 808 TATTTTGGCCTGCCAACTGCGGGGCAAGTTGGCGTCAGTAATACGGTTTCACACTCTGCG 749 Query 446 CTGCCGCTGCGTTGCTATAACTTGATCTGGAATCAGTGGTTCCGTGATGAGAATTTGCAG 505 ||||| | | || || | || | || || ||||| ||||| |||||||| || Sbjct 748 CTGCCTGTAAGGGCTTACAATCTTATTTATAACCAATGGTTTCGTGACGAGAATTTACAA 689 Query 506 AATTCTGTTCAGATTGACAATGGTGATGGGCCTGACA------ATCCGGTTAACTACAAT 559 ||||| ||| | || || || ||||| ||||| | | | ||| |||| | Sbjct 688 AATTCCGTTGTAGTCGATAAGGGCGATGGCCCTGATACTACTCCTTCTACTAATTACACT 629 Query 560 TTGTGTCGGAGGGGTAAGCGTCATGATTATTTCACGTCGTCGCTTCCATGGCCGCAGAAG 619 | ||| | ||||| || || || || ||||| || | | || ||||| || ||| Sbjct 628 CTTCTTCGTCGTGGTAAACGACACGACTACTTCACCTCTGCATTACCTTGGCCCCAAAAG 569 Query 620 GGTGGAACAGCTATTACATTACCCCTTGGTAC 651 || || || || || | |||| | ||||| Sbjct 568 GGCGGCACTGCCGTTTCTCTACCTTTAGGTAC 537 >seq818 Length=1124 Score = 86.0 bits (94), Expect = 2e-13 Identities = 132/191 (69%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1444 TGCTCAGAAGTTTACTTCGTTGCCTACTCTTAATAGCACTTTTATATCTGATACTCCGCC 1503 ||| || ||||||||| | || ||| | |||||||||||||| |||||||| || Sbjct 1124 TGCGCAAAAGTTTACTAGTCTCCCGACTTTGAATAGCACTTTTATTCAAGATACTCCACC 1065 Query 1504 TATTTCGCGTATTGTTGCTGTNNNNNNNNGTGCGAATGGTCAGCAGTTTTTGTTTGATTC 1563 | | |||| | | ||||| ||| ||||| || || || || || ||| | Sbjct 1064 ACTAGCCCGTAATTTGGCTGTTGGTGCTTCTGCTAATGGACAACAATTGTTATTAGATGC 1005 Query 1564 TTTTTTCCGCATCCGTGCGGCTAGGCCCATGCCGTTGTACTCGGTGCCTGGTTTGATTGA 1623 ||||| | || || || | || |||| |||| || || |||||||||||||| Sbjct 1004 GTTTTTTCATATTAACGCTGCACGTCCATTGCCAATGTATTCTGTTCCTGGTTTGATTGA 945 Query 1624 CCATTTCTAAT 1634 ||||||||||| Sbjct 944 CCATTTCTAAT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14290723567120