Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027642.1 Length=4624 Score E Sequences producing significant alignments: (Bits) Value seq624 210 6e-51 >seq624 Length=2007 Score = 210 bits (232), Expect = 6e-51 Identities = 248/333 (74%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 803 ATTTGGCGACTGCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTTTCAGATACAGA 862 ||||| | |||||||||| |||||||| || |||||||||||| ||||||| || || | Sbjct 384 ATTTGTCTGCTGCTACTGCTGCTACTATCAATCAGCTTCGTCAGTCTTTTCAAATTCAAA 325 Query 863 AGATTTATGAGAGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTATTCAGGCTCACT 922 || | |||| |||| || ||||| ||||| || ||||| ||| | || | | |||| Sbjct 324 AGCTGCTTGAGCGGGACGCTCGTGGCGGTACTCGGTATACCGAGATAATCCGCTCACACT 265 Query 923 TTGGCGTCACTTCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGGTGGTGGTTCTA 982 ||||||| ||||||| || ||||| | || || |||||||| | || |||||||||| Sbjct 264 TTGGCGTAGCTTCTCCAGATGCTCGCCTTCAACGCCCTGAGTATTTGGGCGGTGGTTCTA 205 Query 983 CTCCCATTAATGTTAATCCTATTGCGCAGACGCAAGGTACTGGGGCGTCTGGCACGACTA 1042 |||| |||||| || ||||||||| || || |||||||| || ||||| |||| Sbjct 204 CTCCTATTAATATTGCTCCTATTGCTCAAACTGGTGGTACTGGTGCACAAGGCACTACTA 145 Query 1043 CACCGCAGGGTAATCTGGCCGCTATTGGTAC-TATGTCACATAGAGGCGTCGGTTTTACT 1101 | || || ||||| ||||| || ||||||| ||| | | || |||| |||||| || Sbjct 144 CTCCTCAAGGTAACCTGGCTGCGTTTGGTACTTATATGGC-TAAAGGCCATGGTTTTTCT 86 Query 1102 AAGTCGTTTACCGAGCATTGTCTGCTAATTGGT 1134 | || ||| |||||| ||| | |||||| Sbjct 85 CAATCATTTGTTGAGCATGGTCATGTTATTGGT 53 Score = 78.8 bits (86), Expect = 3e-11 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 79 ACTTTCGATAGTGGTTATTTGATTCCTATTTATGT-CGATGAGGCTTTGCCGGGTGATAC 137 ||||| |||||||||||| | |||||| |||||| || |||| |||||| ||||| || Sbjct 1093 ACTTTTGATAGTGGTTATCTAGTTCCTA-TTATGTGTGAGGAGGTTTTGCCTGGTGACAC 1035 Query 138 GTTCAATCTGAGTTTAACTACGTTTGCTCGTTTGTCTACGCCGTTGCATCCTGTAATGGA 197 ||| ||| | | | | || | ||||| ||| || | || ||| | || || ||||| Sbjct 1034 GTTTAATGTTAATGTTACGATGTTTGGTCGACTGGCCACTCCGATATTCCCAGTTATGGA 975 Query 198 TAATATGAAGGCTGATGTC--tttttttCGCTGTCCCGTATAGGCTTGTTTGGACGCATT 255 |||| | | ||| || | |||||| ||| || || | | || |||| || | Sbjct 974 TAATCTCCA-TCTGGACTCATTCTTTTTCTTTGTTCCTAATCGTTTGGTATGGA-ACAAT 917 Query 256 TTCGTTAATTTTTTGGTTGAGCAAGCTAACCCGACGGATAGTA 298 | ||||| ||| ||| ||||| | ||| || | ||||||| Sbjct 916 TGGGTTAAATTTATGGGGGAGCAGGATAATCCTGCCGATAGTA 874 Score = 77.0 bits (84), Expect = 1e-10 Identities = 120/172 (70%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 422 GGGCGTATAATTTGATTTGGAATCAGTGGTTTCGTGATCAGAATTTGCAGAATTCTGTTG 481 |||| || ||| | |||| || || ||||||||||| ||||||| || ||||| |||| Sbjct 738 GGGCTTACAATCTTATTTATAACCAATGGTTTCGTGACGAGAATTTACAAAATTCCGTTG 679 Query 482 TTGTCGATATGGGTGACGGTCCTGATA------ATCCGGCTAATTATGTTTTGTTGAGGC 535 | ||||||| ||| || || ||||||| | | ||||||| | | | | | Sbjct 678 TAGTCGATAAGGGCGATGGCCCTGATACTACTCCTTCTACTAATTACACTCTTCTTCGTC 619 Query 536 GCGGTAAGCGCCATGATTATTTTACGGCGTCGTTGCCTTGGCCTCAGAAGGG 587 | ||||| || || || || || || | | || |||||||| || ||||| Sbjct 618 GTGGTAAACGACACGACTACTTCACCTCTGCATTACCTTGGCCCCAAAAGGG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14684310445480