Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027645.1 Length=4631 Score E Sequences producing significant alignments: (Bits) Value seq624 237 5e-59 seq818 84.2 6e-13 >seq624 Length=2007 Score = 237 bits (262), Expect = 5e-59 Identities = 445/657 (68%), Gaps = 28/657 (4%) Strand=Plus/Minus Query 40 TTTGCGATGGTCCCGCGCGCGGAGATTCCGCGCTCGTCGTTTGCGATGCAGAAGACTTTG 99 ||||| ||||| || ||||| |||||||| || |||| | ||| |||| || | Sbjct 1158 TTTGCTATGGTTCCTAAAGCGGATATTCCGCGTTCTAAGTTTTCTATGGAGAAAACGCTT 1099 Query 100 AAGACTACGTTTGATTCGGGTTACTTGGTCCCCATCATGTGCGAGGAGGTGCTTCCCGGG 159 || || || |||||| ||||| | || || || ||||| |||||||| | || || Sbjct 1098 AA-ACCACTTTTGATAGTGGTTATCTAGTTCCTATTATGTGTGAGGAGGTTTTGCCTGGT 1040 Query 160 GATACGTTCAACGTTAAGACCACGCTGTTTGGTCGTCTGGCTACGCCGATTTTTCCTGTG 219 || ||||| || ||||| ||| |||||||||| ||||| || ||||| || || || Sbjct 1039 GACACGTTTAATGTTAATGTTACGATGTTTGGTCGACTGGCCACTCCGATATTCCCAGTT 980 Query 220 ATGGACAACCTTCACCTCGAGACGttttttttCTTCGTGCCGAATCGTTTGGTTTGGTCT 279 ||||| || || || || || | || |||||||| || || ||||||||||| ||| Sbjct 979 ATGGATAATCTCCATCTGGACTCATTCTTTTTCTTTGTTCCTAATCGTTTGGTATGGAAC 920 Query 280 GATTGGCAGCGTTTCATGGGTGAGCAGGCGAACCCGGCTGATTCGATTTCTTTTTCTATT 339 ||||| || ||||| ||||||| || || || ||| ||||| | ||||| Sbjct 919 AATTGGGTTAAATTTATGGGGGAGCAGGATAATCCTGCCGATAGTATTTCCTACTCTATC 860 Query 340 CCGCAGGTCGTTAGTCCTGCGAGTGGTTATGTTGCGAACTCGCTCTATGACTATTTCGGT 399 || || ||| || || | ||||||| | || || | |||||||| || Sbjct 859 CCTCAACAAGTTTCACCAGCCGGAGGTTATGCAGTTGGTTCACTGCAAGACTATTTTGGC 800 Query 400 TTACCCACGGTCGGGCAGGTCGCCGGGACGAACACGGTTTCCCACTCTGCGCTTCCGATG 459 | || || | ||||| || | || | || |||||||| ||||||||||| || | Sbjct 799 CTGCCAACTGCGGGGCAAGTTGGCGTCAGTAATACGGTTTCACACTCTGCGCTGCCTGTA 740 Query 460 CGCGCCTACAACCTGATTTTCAACCAATGGTTTCGTGATGAGAATCTTCAAAATTCTCTT 519 | || ||||| || |||| ||||||||||||||||| |||||| | |||||||| Sbjct 739 AGGGCTTACAATCTTATTTATAACCAATGGTTTCGTGACGAGAATTTACAAAATTC---- 684 Query 520 GGTTTTGGTGCCACTAACACAGTTTCTGATTTTGGCGACGGTCCTGA------CCCTTAC 573 ||| | || ||| ||||| || ||||| |||| Sbjct 683 CGTTGTAGT-----------------CGATAAGGGCGATGGCCCTGATACTACTCCTTCT 641 Query 574 ACCAATTACACGCTCATGCGCCGTGGCAAACGTGCGGACTATTTCACGTCGTGTTTGCCG 633 || |||||||| || | || ||||| ||||| ||||| ||||| || || || Sbjct 640 ACTAATTACACTCTTCTTCGTCGTGGTAAACGACACGACTACTTCACCTCTGCATTACCT 581 Query 634 TGGCCTCAGAAGGGCGGTGTTGCTGTTTCTCTTCCGCTAGGCACGTCTGCTCCTATC 690 ||||| || |||||||| ||| |||||||| || |||| || ||||| |||||| Sbjct 580 TGGCCCCAAAAGGGCGGCACTGCCGTTTCTCTACCTTTAGGTACTTCTGCACCTATC 524 Score = 152 bits (168), Expect = 2e-33 Identities = 280/410 (68%), Gaps = 3/410 (1%) Strand=Plus/Minus Query 823 GGTGCTGCTGGCACTGCTACCACCGGCCTTTATGCGGACCTTTCTACTGCGACGGCTGCG 882 ||| ||||| |||| | | || || | ||||| || | ||| |||| || ||||| Sbjct 418 GGTTCTGCT---ACTGTTGCTACTGGTTTATATGCTGATTTGTCTGCTGCTACTGCTGCT 362 Query 883 ACTATTAACCAGCTGCGGCAGAGCTTTCAGATCCAGAAGTTGCTTGAGCGCGATGCGCGT 942 ||||| || ||||| || ||| ||||| || || ||| |||||||||| || || ||| Sbjct 361 ACTATCAATCAGCTTCGTCAGTCTTTTCAAATTCAAAAGCTGCTTGAGCGGGACGCTCGT 302 Query 943 GGCGGCACCCGCTATACCGAGATTGTTCGTTCACACTTCGGTGTTATTTCGCCGGATGCT 1002 ||||| || || ||||||||||| | || |||||||| || || ||| || |||||| Sbjct 301 GGCGGTACTCGGTATACCGAGATAATCCGCTCACACTTTGGCGTAGCTTCTCCAGATGCT 242 Query 1003 AGGCTGCAGCGTCCGGAGTACCTTGGTGGTGGTCATTCGATGATTTCGATGAATCCTATT 1062 | || || || || ||||| | || |||||| | | ||| || ||||||| Sbjct 241 CGCCTTCAACGCCCTGAGTATTTGGGCGGTGGTTCTACTCCTATTAATATTGCTCCTATT 182 Query 1063 GCTCAGACGCAAGGCACGGGTGCGAGTGGTACCTCCACGCCGCAGGGTAACTTGGCTGCT 1122 ||||| || || || ||||| || || | || || || |||||| ||||||| Sbjct 181 GCTCAAACTGGTGGTACTGGTGCACAAGGCACTACTACTCCTCAAGGTAACCTGGCTGCG 122 Query 1123 TTCGGGCATTACCTTGCGCCGAATCATGGTTTTACGCAGAGCTTTACCGAGCATGGTCAC 1182 || || ||| | || ||||||||| | || ||| ||||||||||| Sbjct 121 TTTGGTACTTATATGGCTAAAGGCCATGGTTTTTCTCAATCATTTGTTGAGCATGGTCAT 62 Query 1183 ATCATCGGTTTGGTGGCGGTTCGTGCGGATCTGACGTATCAGCAGGGCAT 1232 | || ||| | || | || || || ||||| || ||||| || || || Sbjct 61 GTTATTGGTCTCGTATCTGTACGAGCTGATCTTACTTATCAACAAGGTAT 12 >seq818 Length=1124 Score = 84.2 bits (92), Expect = 6e-13 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1459 GCGCAGAAGTTTACGTCGCTTCCGACACTCGCTTCGACGTTTATCCAGGACACTCCCCCT 1518 ||||| |||||||| || ||||| | | || ||||| || || ||||| || Sbjct 1123 GCGCAAAAGTTTACTAGTCTCCCGACTTTGAATAGCACTTTTATTCAAGATACTCCACCA 1064 Query 1519 TTGTCCCGCAACCTTGCGGTTGGCGCTGGGGCCAATGGCCAGCAATTGCTCCTGGACGCT 1578 | |||| || | || ||||| ||| || ||||| || |||||| | | || || Sbjct 1063 CTAGCCCGTAATTTGGCTGTTGGTGCTTCTGCTAATGGACAACAATTGTTATTAGATGCG 1004 Query 1579 TTCTTTAACATGCAAGTCGCCCGTCCGCTCCCGATGTATTCGGTCCCCGGTTTGATTGAT 1638 || ||| | || | | || ||||| | || |||||||| || || ||||||||||| Sbjct 1003 TTTTTTCATATTAACGCTGCACGTCCATTGCCAATGTATTCTGTTCCTGGTTTGATTGAC 944 Query 1639 CATTTCTGATATGC 1652 ||||||| |||||| Sbjct 943 CATTTCTAATATGC 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14706709698720