Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028993.1 Length=4468 Score E Sequences producing significant alignments: (Bits) Value seq624 297 5e-77 seq818 127 6e-26 >seq624 Length=2007 Score = 297 bits (328), Expect = 5e-77 Identities = 462/647 (71%), Gaps = 19/647 (3%) Strand=Plus/Minus Query 37 CATCGTTTTGCTATGATTCCGCACGCTGACATTCCGCGTGCTAAGTTTGATCGTCAGTTT 96 ||| | ||||||||| |||| | || || ||||||||| |||||||| | || Sbjct 1164 CATAGCTTTGCTATGGTTCCTAAAGCGGATATTCCGCGTTCTAAGTTTTCTATGGAGAAA 1105 Query 97 ACTCATAAGACGACTTTTGATGCTGGTTATCTTGTTCCTGTTTATGTG-GATGAGGTTCT 155 || | ||| || ||||||||| ||||||||| |||||| || ||||| || |||||| | Sbjct 1104 ACGCTTAA-ACCACTTTTGATAGTGGTTATCTAGTTCCTATT-ATGTGTGAGGAGGTTTT 1047 Query 156 TCCCGGTGATACATTTAATTTGAATATGACTGCTTTTGCTCGTCTGGCTACTCCTTTTTT 215 || ||||| || |||||| | ||| | || |||| ||| ||||| ||||| | || Sbjct 1046 GCCTGGTGACACGTTTAATGTTAATGTTACGATGTTTGGTCGACTGGCCACTCCGATATT 987 Query 216 CCT-GTTATGGATAATATGGTTTTGGAT--AGTCtttttcttttttGTTCCTAACCGTTT 272 || |||||||||||| | | |||| | ||||||||||| |||||||| ||||| Sbjct 986 CCCAGTTATGGATAATCTCCATCTGGACTCATTCTTTTTCTTT---GTTCCTAATCGTTT 930 Query 273 GATTTGGGATAACTGGCAAAAGTTTATGGTG-AGCAGCGTAACCCTGGTGATTCGACTTC 331 | | ||| | || ||| || ||||||| | ||||| ||| |||| ||| | ||| Sbjct 929 GGTATGGAACAATTGGGTTAAATTTATGGGGGAGCAGGATAATCCTGCCGATAGTATTTC 870 Query 332 -TATGTTGTTCCTCAACAAGTTTCTCCCGCAGGTGGTTATGCTGTTGGTTCTTTGCAAGA 390 || | | |||||||||||||| || || || |||||||| |||||||| ||||||| Sbjct 869 CTACTCTATCCCTCAACAAGTTTCACCAGCCGGAGGTTATGCAGTTGGTTCACTGCAAGA 810 Query 391 CTATATGGGTTTACCAACTGTTGGTCAGGTTGGTGCTGGCAATACTATTTCCCATT--GC 448 |||| | || | ||||||| || || ||||| | | ||||| |||| || | || Sbjct 809 CTATTTTGGCCTGCCAACTGCGGGGCAAGTTGGCGTCAGTAATACGGTTTCACACTCTGC 750 Query 449 GCTTTTT-TACTCGTGCCTATAATCTTATTTGGAATGAATGGTTTAGAGATCAGAATTTA 507 ||| | || | || || |||||||||| || |||||||| | || |||||||| Sbjct 749 GCTGCCTGTAA--GGGCTTACAATCTTATTTATAACCAATGGTTTCGTGACGAGAATTTA 692 Query 508 CAAAATTCTGTAACCGTTGATACTGGTGACGGTCCTGATGCGTCGGCTTCAACTAATTAC 567 |||||||| || || |||| || || || |||||| | | |||| ||||||||| Sbjct 691 CAAAATTCCGTTGTAGTCGATAAGGGCGATGGCCCTGATACTACTCCTTCTACTAATTAC 632 Query 568 ACGTTGTTGCGCCGTGGTAAGCGGCATGATTATTTTACTTCTGCACTTCCATGGCCTCAG 627 || | | || |||||||| || || || || || || |||||| | || ||||| || Sbjct 631 ACTCTTCTTCGTCGTGGTAAACGACACGACTACTTCACCTCTGCATTACCTTGGCCCCAA 572 Query 628 AAG---GGTTCTTCTGTAACTTTGCCATTAGGTACCAGTGCTCCTAT 671 ||| || || | || || | || |||||||| ||| ||||| Sbjct 571 AAGGGCGGCACTGCCGTTTCTCTACCTTTAGGTACTTCTGCACCTAT 525 Score = 208 bits (230), Expect = 2e-50 Identities = 279/388 (72%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 810 TACTGGTTTGTATGCAGATTTGAGTCAGGCTACTGCTGCAACTATTAATCAGTTGCGTCA 869 ||||||||| ||||| |||||| | ||||||||||| ||||| |||||| | ||||| Sbjct 401 TACTGGTTTATATGCTGATTTGTCTGCTGCTACTGCTGCTACTATCAATCAGCTTCGTCA 342 Query 870 GTCATTTCAGATTCAAAAACTTTTAGAGCGTGATGCTCGTGGTGGTACACGTTATACGGA 929 ||| ||||| |||||||| || | ||||| || |||||||| ||||| || ||||| || Sbjct 341 GTCTTTTCAAATTCAAAAGCTGCTTGAGCGGGACGCTCGTGGCGGTACTCGGTATACCGA 282 Query 930 GATTATTCGTGCTCATTTCGGTGTTATTTCTCCTGACGCTCGTTTACAGCGTCCTGAATA 989 ||| || || | || || || || |||||| || ||||| | || || ||||| || Sbjct 281 GATAATCCGCTCACACTTTGGCGTAGCTTCTCCAGATGCTCGCCTTCAACGCCCTGAGTA 222 Query 990 TCTTGGTGGCGGCTCTACTCCAGTTATCATTAATCCTATTGCCCAAACATCGGGTACAGG 1049 | | || || || |||||||| ||| ||| ||||||||| ||||| ||||| || Sbjct 221 TTTGGGCGGTGGTTCTACTCCTATTAATATTGCTCCTATTGCTCAAACTGGTGGTACTGG 162 Query 1050 TGTTACTGGCGGTAGTACTCCTCTCGCTAATCTTGCTGGTGTTGGTACTGTCCTCGCCTC 1109 || ||| || |||||||| | ||| || |||| |||||||| | || Sbjct 161 TGCACAAGGCACTACTACTCCTCAAGGTAACCTGGCTGCGTTTGGTACTTATATGGCTAA 102 Query 1110 TGGTCATGGCTTTACTCAGTCGTTCACTGAACATGGCGTAATTATTGGTTTGGTTAGTAT 1169 || ||||| ||| |||| || || ||| ||||| |||||||| | || | | Sbjct 101 AGGCCATGGTTTTTCTCAATCATTTGTTGAGCATGGTCATGTTATTGGTCTCGTATCTGT 42 Query 1170 TCGTGCTGATTTGACTTATCAACAGGGT 1197 || |||||| | ||||||||||| ||| Sbjct 41 ACGAGCTGATCTTACTTATCAACAAGGT 14 >seq818 Length=1124 Score = 127 bits (140), Expect = 6e-26 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1426 GCTCAGAAGTTTACATCTTTGCCTACTTTGAATAGTACGTTTATTCAGGAAAATCCTCCT 1485 || || |||||||| | | || ||||||||||| || |||||||| || | ||| || Sbjct 1123 GCGCAAAAGTTTACTAGTCTCCCGACTTTGAATAGCACTTTTATTCAAGATACTCCACCA 1064 Query 1486 GTTTCTCGTGTTGTTGCGGTTGGTGCTGCGGCTAATGGACAGCAGTTTATTTTTGATTCT 1545 | | ||| | | || ||||||||| | ||||||||||| || || | || ||| | Sbjct 1063 CTAGCCCGTAATTTGGCTGTTGGTGCTTCTGCTAATGGACAACAATTGTTATTAGATGCG 1004 Query 1546 TTCTTTCATAATGTTGTTGCTCGTCCTATGCCCTTGTATTCTGTTCCTGGCATGATCGAT 1605 || ||||||| | | ||| ||||| |||| |||||||||||||||| |||| || Sbjct 1003 TTTTTTCATATTAACGCTGCACGTCCATTGCCAATGTATTCTGTTCCTGGTTTGATTGAC 944 Query 1606 CATTTCTAATATG 1618 ||||||||||||| Sbjct 943 CATTTCTAATATG 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14185127087560