Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq624 215 1e-52 seq818 87.8 5e-14 >seq624 Length=2007 Score = 215 bits (238), Expect = 1e-52 Identities = 398/578 (69%), Gaps = 23/578 (4%) Strand=Plus/Minus Query 95 AAACTACTTTCGATGCCGGTTTCTTAGTACCTGTATATGTA-GATGAAATGTTGCCAGGC 153 |||| ||||| ||| |||| |||| ||| | ||||| || || | ||||| || Sbjct 1098 AAACCACTTTTGATAGTGGTTATCTAGTTCCTAT-TATGTGTGAGGAGGTTTTGCCTGGT 1040 Query 154 GATACTTTCCGCCTTAATATGACGGCATTTGCCCGTTTAGCAACTCCTCTTTATCCAATT 213 || || || ||||| | ||| |||| || | || ||||| | | ||| || Sbjct 1039 GACACGTTTAATGTTAATGTTACGATGTTTGGTCGACTGGCCACTCCGATATTCCCAGTT 980 Query 214 ATGGATAATATGCACTTAGATTCATTCTTTTTCTTTGTCCCAAATAGATTAATTTGGAAC 273 ||||||||| | || | || ||||||||||||||||| || ||| | || | |||||| Sbjct 979 ATGGATAATCTCCATCTGGACTCATTCTTTTTCTTTGTTCCTAATCGTTTGGTATGGAAC 920 Query 274 AATTGGCAAAAATTTATGGGTCAACAAGCGAACCCT---GATAGTTCGATTTCTTTTGTT 330 |||||| ||||||||||| | || | || ||| |||||| ||||| | | Sbjct 919 AATTGGGTTAAATTTATGGGGGAGCAGGATAATCCTGCCGATAGT---ATTTCCTACTCT 863 Query 331 GTACCCCAACAAGTATCACCTGCTGGTGGATACGCTATTGGATCATTACAAGATTACATG 390 | || |||||||| ||||| || || || || || |||| ||| | ||||| || | Sbjct 862 ATCCCTCAACAAGTTTCACCAGCCGGAGGTTATGCAGTTGGTTCACTGCAAGACTATTTT 803 Query 391 GGTTTACCTACTGTTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCATTGTGCTTTTTGG 450 || | || |||| || ||||| || | ||||||| || || | ||| | | Sbjct 802 GGCCTGCCAACTGCGGGGCAAGTTGGCGTCAGTAATACGGTTTCACACTCTGCGCT---G 746 Query 451 CC---ACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAAC 507 || | | |||||||| ||||| |||||| | |||||| | || || ||||||||||| Sbjct 745 CCTGTAAGGGCTTACAATCTTATTTATAACCAATGGTTTCGTGACGAGAATTTACAAAAT 686 Query 508 TCTGTTACCGTTGATCTTGGTGATGGCCCTGATA------CTGTTACTAACTATACTTTA 561 || ||| || ||| || ||||||||||||| || |||||| || ||| | Sbjct 685 TCCGTTGTAGTCGATAAGGGCGATGGCCCTGATACTACTCCTTCTACTAATTACACTCTT 626 Query 562 TTACGACGTGGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAA---A 618 | || ||||| |||||| | || ||||| || ||||| | |||||||| ||||| Sbjct 625 CTTCGTCGTGGTAAACGACACGACTACTTCACCTCTGCATTACCTTGGCCCCAAAAGGGC 566 Query 619 GGTACTTCTGTAACGTTACCATTAGGAACTTCTGCACC 656 || ||| | || | |||| ||||| ||||||||||| Sbjct 565 GGCACTGCCGTTTCTCTACCTTTAGGTACTTCTGCACC 528 Score = 214 bits (236), Expect = 5e-52 Identities = 277/383 (72%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 841 GGTTTATATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCA 900 ||||||||||| ||||| |||| || ||||| || || || ||||| | ||||| || Sbjct 397 GGTTTATATGCTGATTTGTCTGCTGCTACTGCTGCTACTATCAATCAGCTTCGTCAGTCT 338 Query 901 TTTCAGATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATT 960 ||||| |||||||| || ||||| |||| || |||||||||||||| ||||| || || Sbjct 337 TTTCAAATTCAAAAGCTGCTTGAGCGGGACGCTCGTGGCGGTACTCGGTATACCGAGATA 278 Query 961 ATACGCTCACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATC 1020 || |||||||| ||||| || |||||| ||||||||| | || || || ||||| | Sbjct 277 ATCCGCTCACACTTTGGCGTAGCTTCTCCAGATGCTCGCCTTCAACGCCCTGAGTATTTG 218 Query 1021 GGGGGTGGATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCT 1080 || ||||| || || |||||||||| ||| || ||||| || |||| | ||| Sbjct 217 GGCGGTGGTTCTACTCCTATTAATATTGCTCCTATTGCTCAAACTGGTGGTACTGGTGCA 158 Query 1081 AGTGGAACTACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCATAAT 1140 || |||||||| ||| || | || ||||| | |||||| ||||| | Sbjct 157 CAAGGCACTACTACTCCTCAAGGTAACCTGGCTGCGTTTGGTACTTATATGGCTAAAGGC 98 Query 1141 CATGGCTTTACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGT 1200 ||||| ||| || | ||| | ||| |||||| || | || | ||||||||||| Sbjct 97 CATGGTTTTTCTCAATCATTTGTTGAGCATGGTCATGTTATTGGTCTCGTATCTGTACGA 38 Query 1201 GCCGATCTTACATACCAGCAAGG 1223 || |||||||| || || ||||| Sbjct 37 GCTGATCTTACTTATCAACAAGG 15 >seq818 Length=1124 Score = 87.8 bits (96), Expect = 5e-14 Identities = 140/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 1452 TGCACAAAAATTCACTGCTACACCTACGTTGAATACAACGTTTATACAAGACACACCACC 1511 ||| ||||| || ||| | || || ||||||| || ||||| ||||| || ||||| Sbjct 1124 TGCGCAAAAGTTTACTAGTCTCCCGACTTTGAATAGCACTTTTATTCAAGATACTCCACC 1065 Query 1512 AGTGAGTCGAGTAGTA--GCAGTTGGAGCAGCTGCTAACGGACAACAATTTATTTTTGAT 1569 | | || | ||| | || ||||| || ||||||| ||||||||||| | || ||| Sbjct 1064 ACT-AGCCC-GTAATTTGGCTGTTGGTGCTTCTGCTAATGGACAACAATTGTTATTAGAT 1007 Query 1570 AGCTTTTTTGATTGTAAAAAAGCACGACCAATGCCAATGTACAGCGTACCTGGCTTAATC 1629 |||||| || ||| ||||| ||| |||||||||| || ||||| || || Sbjct 1006 GCGTTTTTTCATATTAACGCTGCACGTCCATTGCCAATGTATTCTGTTCCTGGTTTGATT 947 Query 1630 GATCATTTCT-ATATG 1644 || ||||||| ||||| Sbjct 946 GACCATTTCTAATATG 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13561147890160