Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001439.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq5493 93.3 7e-16 seq4295 87.8 3e-14 seq5745 80.6 4e-12 seq490 78.8 2e-11 seq22495 77.0 5e-11 >seq5493 Length=32325 Score = 93.3 bits (102), Expect = 7e-16 Identities = 116/155 (75%), Gaps = 7/155 (5%) Strand=Plus/Minus Query 1730 TGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTT 1789 ||||||||||| ||| || ||| ||||| | |||||||||||| || || || || || Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTT 31501 Query 1790 -ACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAG-TGCTTTAACTTC 1847 ||| ||| ||||||||| | ||| | || || ||||||||||||| | ||| | | Sbjct 31500 CACATTTG-ATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTT----TGC 31446 Query 1848 AAATAATTGGGGCTTATGTCATCAATGACGTTGTA 1882 | ||| | || || ||||||||||| |||||| Sbjct 31445 AGATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 >seq4295 Length=67413 Score = 87.8 bits (96), Expect = 3e-14 Identities = 173/250 (69%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 1730 TGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTT 1789 ||||||| | ||||||||| |||| ||||| |||||||||||| | || || || || || Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1790 ACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTTCAA 1849 || || | ||| | | || ||| |||| |||||||| || | ||| || ||| Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 1850 ATA--ATTGGGGCTTATGTCATCAATGACGTTGTATTCCA--CTGAGTTGGAATAGACAC 1905 ||| || | | || |||||| || |||||||| ||| | || ||| | Sbjct 46724 ATAGGATAGAG--ATACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATT 46669 Query 1906 GTGAATTAAAGTCCAAATGA--CCGCTCAAATAATTATGTGGGCCTAATGCACGAGCCCA 1963 |||||||| ||| |||| || | | || |||||||||| ||| | || ||||| Sbjct 46668 TCGAATTAAAATCC--ATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCA 46611 Query 1964 CATTGTCTTT 1973 ||||||||| Sbjct 46610 TATTGTCTTT 46601 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 4e-12 Identities = 171/251 (68%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 1728 CCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATA- 1786 || |||||||| | |||||| |||| || || |||||||||||||| || || || || Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1787 TTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTT 1846 ||| || || || ||||| | |||||| || || | || || | || ||| | Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1847 CAAATAATTGGGGCTTATGTCATCAATGACGTTGTATTCCA--CTGAGTTGGAATAGACA 1904 |||||| || |||||||||||||||| ||| ||| | ||| || || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGT--TATACCATGCGTCGTTCGATTATGTT 43717 Query 1905 CGTGAATTAAAGTCCAAATGACCGCTCAAATAATTATGTGGGCCTAATGCACGAGCCCAC 1964 ||||| || |||| | || | | |||||||||||| || || | ||| ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1965 ATTGTCTTTCC 1975 | ||| || || Sbjct 43778 ACTGTTTTACC 43788 >seq490 Length=137872 Score = 78.8 bits (86), Expect = 2e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1733 ATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACA 1792 |||||| || || |||||||||||||| ||||||||||| | ||||| ||||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1793 GTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTT 1840 | | ||||||| | | |||||||| ||||| |||| ||||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT 70511 >seq22495 Length=567 Score = 77.0 bits (84), Expect = 5e-11 Identities = 166/238 (70%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 1728 CCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATA- 1786 || |||||||| || ||||| | | || || | |||||||||||| || ||||| || Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1787 TTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTT-TAACT 1845 ||| || |||| ||||||| ||||| || | | || || || ||||| | | | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1846 TCAAATAATTGGGGCTTATGTCATCAATGACGTTGTATTCCACTGAGTTGGAATAGAC-A 1904 | |||||||| || |||||||| |||||||| || ||| || | | | || | Sbjct 248 T-AAATAATTCGGAGGGATGTCATCGATGACGTTATA--CCA-TGCATC--ATTTGAGTA 195 Query 1905 CGT----GAATTAAAGTCCAAATGACCGCTCAAATAATTATGTGGGCCTAATGCACGA 1958 ||| |||||||| |||||| || | | || || ||||||||||||| |||| Sbjct 194 CGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8353647308370