Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001467.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq3283 114 2e-22 seq3439 113 8e-22 seq22495 96.9 6e-17 seq35612 87.8 3e-14 seq30129 77.0 6e-11 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 195/281 (69%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 1818 GAACTCTTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACC 1877 |||| ||||||||| |||||| |||||||| || | |||| | ||||| || || Sbjct 2305 GAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCC 2246 Query 1878 TTTAATTTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCAGTCCCTCTGGGACCCCAT 1937 |||||||||||| ||||||||||| || | |||| |||||| | | ||| | || | Sbjct 2245 TTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTAC 2186 Query 1938 GAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTA 1991 ||| | | | | |||| ||| || | ||| |||||| || |||||||| || Sbjct 2185 GAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATA 2126 Query 1992 CCAGGCAGCATTATTGAAGACCTTT--GGACTAAGGTCCAGGTGTCCACACAGGTAATTA 2049 ||| ||| ||| |||| || ||| | | ||| |||| ||| | ||| || Sbjct 2125 CCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTG 2068 Query 2050 TGTGGGCCTAAAGATCTGGCCCATATCGTCTTCCCTGTTCT 2090 ||||||||||| || | |||||| || |||||| |||| Sbjct 2067 TGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 197/285 (69%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 1814 CTAGGAACTCTTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTC 1873 ||| |||| ||||||||| | |||||| ||||||| || | |||| | ||||| | Sbjct 989 CTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCC 930 Query 1874 CACCTTTAATTTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCAGTCCCTCTGGGACC 1933 | |||||||||||||| ||||| ||||| || | ||||| ||||| | | ||| | | Sbjct 929 CGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGC 870 Query 1934 CCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGT 1987 | | ||| | | | | |||| ||| || | ||| ||| ||||| ||||||| Sbjct 869 CTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGT 810 Query 1988 TGTACCAGGCAGCATTATTGAAGACCTTT--GGACTAAGGTCCAGGTGTCCACACAGGTA 2045 | ||||| ||| ||| |||| || ||| | | ||| |||| ||| | ||| Sbjct 809 TATACCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752 Query 2046 ATTATGTGGGCCTAAAGATCTGGCCCATATCGTCTTCCCTGTTCT 2090 || ||||||||||| || | |||||| || |||||| |||| Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 171/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 1824 TTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1883 ||||||||| | |||||| |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1884 TTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCAGTCCCTCTGGGACCCCATGAATTC 1943 |||||| ||||| ||||| || | |||| |||||||| | ||| | || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1944 CTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGC 1997 | | | |||| ||| || | ||| || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1998 AGCATTATTGAAGACCTTT--GGACTAAGGTCCAGGTGTCCACACAGGTAATTATGTGGG 2055 | ||| |||| || ||| | | ||| |||| ||| | ||| || |||||| Sbjct 206 ATCAT--TTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 2056 CCTAAAGA 2063 ||||| || Sbjct 148 CCTAATGA 141 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1824 TTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1883 ||||||||| | |||||| |||||||| || | |||| | ||||| || |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1884 TTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCA 1919 |||||| ||||| ||||| || | ||||| |||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1818 GAACTCTTTATAGGACGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACC 1877 |||| ||| ||||| | |||||| |||||||| || | |||| | ||||| || || Sbjct 2349 GAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCC 2408 Query 1878 TTTAATTTGAACGGGTTTCCCGTATTTCGTGTTGGACTGCCA 1919 |||||||||||| |||| ||||| || | |||| |||||| Sbjct 2409 TTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8772202979400