Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001507.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq3439 122 1e-24 seq3283 116 6e-23 seq5745 105 1e-19 seq33 104 4e-19 seq22495 102 1e-18 seq1993 98.7 2e-17 seq4295 95.1 2e-16 seq54129 93.3 7e-16 seq77518 91.5 2e-15 seq953 82.4 1e-12 seq490 78.8 2e-11 >seq3439 Length=62978 Score = 122 bits (134), Expect = 1e-24 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 1672 TCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1731 |||| ||||||| || ||||| || || || ||||||||||||||||| |||||||| Sbjct 961 TCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA 902 Query 1732 TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACTT 1791 || ||| | ||||||| || || || || | || | || |||| ||| | Sbjct 901 CTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1792 TAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCCT 1851 || ||| | ||| | |||||||||||||||||||||| | | |||||||| | Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1852 AGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 ||||| | ||||| | || | | || || |||||||||| |||||||||||| Sbjct 781 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1672 TCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1731 |||||||||||| || ||||| || || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1732 -TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACT 1790 ||| || || | |||||||| || || || || | || | || |||| ||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1791 TTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCC 1850 ||| ||| | ||| | ||| || ||||||||||||||| | | |||||||| Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1851 TAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | ||||| | ||||| | || | | || || |||||||||| |||||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 240/351 (68%), Gaps = 15/351 (4%) Strand=Plus/Plus Query 1567 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTATGGAAAGTCCA-GTTCTTTAGTG 1625 |||||| |||| || || |||| |||| ||||| || |||||| | | | | || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1626 GAGTGTTTTCCTCTTTGTCGAGGAAAACTTTATA-GCTA-----GCACCCTCTCCAGGAT 1679 | ||| ||| | || | ||| ||||||| | || | |||| ||||||| Sbjct 43492 T-GAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCC---CCAGGAT 43547 Query 1680 TGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTACAG 1738 |||| | |||||| | || || || ||||||||||||||||| || ||||| ||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA- 43606 Query 1739 TTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACTTTAGATAT 1798 || | |||||||| | ||| || || |||| | || ||||||| ||| ||| Sbjct 43607 TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1799 TGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCCTAGAATTG 1858 || | || ||||| |||||||||||| | | ||| || || | ||||| Sbjct 43667 GCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1859 AGATCCA-AATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | ||||| || |||| | | |||||||||||| || | ||||| ||||| Sbjct 43727 AAATCCATAAAGCCC-ATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq33 Length=454124 Score = 104 bits (114), Expect = 4e-19 Identities = 246/360 (68%), Gaps = 14/360 (4%) Strand=Plus/Minus Query 1568 TAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTATGGAAAGTCCA-GTTCTTTAGTGG 1626 || || |||| || || |||| ||||| ||||| || |||||||| | | | | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1627 AGTGTTTTCCTCTTTGTCGAGGAAAACTTTATAGCTAGCACCCT---CTCCAGGATTGCA 1683 | ||| ||| | |||| ||| ||||||| | || || | ||||||||||| Sbjct 403349 -GAATTTGAATCTATATCGAAGAACGCTTTATAAG-ACAACTCTGGACCCCAGGATTGCA 403292 Query 1684 CAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTAG 1742 |||||||| | || || || | ||||||||||||||| |||||||| ||| || || | Sbjct 403291 AAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTTG 403233 Query 1743 TCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATG--TTTCAACTTTAGATATTG 1800 |||||| | | || | || | || | || |||| ||| || ||| ||| Sbjct 403232 ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAA--TTAAATAAGC 403175 Query 1801 CGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCCTAGAATTGAG 1860 || | ||| ||||| |||||||||||| | | ||| ||||| || ||||| | Sbjct 403174 TGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAA 403115 Query 1861 ATCCA-AATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCACATAGTCTTTC 1919 ||||| || |||| | | ||||||||||| || | ||||| ||||| | || |||| Sbjct 403114 ATCCATAAAGCCC-ATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTTC 403056 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1672 TCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1731 |||||||||||| || ||||| | || || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1732 -TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACT 1790 ||| || || | |||||| | | || || || | || | || ||||| ||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1791 TTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCC 1850 ||| ||| | ||| | || |||||||||||||||||| | | |||||||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 190 Query 1851 TAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGA 1903 | ||||| | ||||||| || | | || || |||||||||| ||||||| Sbjct 189 TGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq1993 Length=81530 Score = 98.7 bits (108), Expect = 2e-17 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 1670 TCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCG 1729 || ||||||||||| |||||||| | || || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1730 TA-TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATG--TTTC 1786 || ||| || || | |||||||| | ||| || | | || | || |||| ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1787 AACTTTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAA 1846 || ||| ||| || | ||| ||||| |||||||||||| | ||||| || || Sbjct 74287 AA--TTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1847 ACCCTAGAATTGAGATCCA-AATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGC 1905 | ||||| | ||||| || |||| | | |||||||||||| || | ||||| | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCC-ATTATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1906 CCA 1908 ||| Sbjct 74170 CCA 74168 >seq4295 Length=67413 Score = 95.1 bits (104), Expect = 2e-16 Identities = 235/351 (67%), Gaps = 7/351 (2%) Strand=Plus/Minus Query 1573 GGGGGAGTTGAGGAAGACGAATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTT 1632 ||||| || | ||||| ||||| ||||| || ||||| ||||| | | || Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1633 TTCCTCTTTGTCGAGGAAAACTTTATAGCTAGCACCCTC---TCCA-GGATTGCACAGCA 1688 | |||| ||||| ||| ||||||| | | ||| || ||| |||||| | |||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGCA 46831 Query 1689 CGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCC 1748 ||||| | ||||| || |||||||||||| |||| || ||||| || || | | || Sbjct 46830 CGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCC 46771 Query 1749 AATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGA 1808 ||| |||||| ||||||| ||||| |||| ||| || | ||| | | | Sbjct 46770 AATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATA 46711 Query 1809 CATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCCTAGAATTGAGATCCA-AA 1867 | ||||| || ||||| ||| | || || || | | ||||| | ||||| | Sbjct 46710 CGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATGA 46651 Query 1868 TGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCACATAGTCTTT 1918 |||| | | || |||||||||| || || || ||||| || |||||| Sbjct 46650 AGCCC-ATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTTT 46601 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1672 TCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1731 |||||||||||| || ||||| || || || ||||||||||||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1732 -TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACT 1790 ||| || || | ||| || | || || || | || | || |||| ||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1791 TTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCC 1850 ||| ||| | ||| | |||||| ||||||||||||||| || | |||||||| Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTT 2080 Query 1851 TAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | ||||| | || || | || | | || || ||| ||| || |||||||||||| Sbjct 2079 TGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 2e-15 Identities = 239/353 (68%), Gaps = 19/353 (5%) Strand=Plus/Minus Query 1567 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTATGGAAAGTCCA-GTTCTTTAGTG 1625 |||||| ||| || || |||| ||||| ||||| || |||||||| | | || | | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1626 GAGTGTTTTCCTCTTTGTCGAGGAAAACTTTATA-GCTA-----GCACCCTCTCCAGGAT 1679 | ||| ||| || | ||| ||||||| | || | |||| ||||||| Sbjct 2449 T-GAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCC---CCAGGAT 2394 Query 1680 TGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTACAG 1738 |||| || ||||| | || || || |||||||||||||||| ||| |||| ||| || Sbjct 2393 TGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCA- 2335 Query 1739 TTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATG--TTTCAACTTTAGAT 1796 || | ||| || | | ||| || || | || | || |||| ||| || ||| || Sbjct 2334 TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAA--TTAAAT 2277 Query 1797 ATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCCTAGAAT 1856 | || | ||||||||| |||||||||||| | | ||| ||||| | ||| Sbjct 2276 AAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAAT 2217 Query 1857 TGAGATCCA-AATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | | ||||| || |||| | | |||||||||||| || | |||| ||||| Sbjct 2216 TCAAATCCATAAAGCCC-ATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 1672 TCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1731 |||||||||||| | ||||| || || || ||||||||||||| || |||||||| Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1732 -TTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAAT--GTTTCAA 1788 ||| || || |||||||| || || | || | || | || ||| ||| || Sbjct 1902 CTTTGCA-TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960 Query 1789 CTTTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAAC 1848 ||| ||| | ||| | ||| || ||||| ||||||||| | | |||||||| Sbjct 1961 --TTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGT 2018 Query 1849 CCTAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | ||||| | ||||| | | | | || || |||||||||| |||||||||||| Sbjct 2019 TTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq490 Length=137872 Score = 78.8 bits (86), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 1678 ATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTACA 1737 |||||| || || ||||| || || || ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1738 GTTAGTCTGCCAATCTCTT-TGGGCCCCAATGAGTTCTTTCCAATGTTTCAACTTTAGAT 1796 | || ||||| || | | ||||||||| || || ||||||| ||| | ||| Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1797 ATTGCGGTGTGACATCATCGATGACGTTATAC 1828 || || | ||| ||||| |||||||||||| Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATAC 70468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8165026875460