Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001928.2 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq5745 109 9e-21 seq33 109 9e-21 seq1993 105 1e-19 seq77518 96.9 6e-17 seq4295 96.9 6e-17 seq3283 95.1 2e-16 seq5493 93.3 7e-16 seq22495 84.2 4e-13 seq6801 80.6 4e-12 seq54129 78.8 2e-11 >seq5745 Length=45059 Score = 109 bits (120), Expect = 9e-21 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 ||||||||||||| |||||| ||| || || |||||||||||||| || ||||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || |||||||||||| | ||| || || | || | || | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAGACGC 1893 | ||| || | || ||||||||||||||||||| | |||||||| || | Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1894 GACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCA 1951 || ||| || |||| || | | ||| |||||||| || |||| ||||||||| Sbjct 43721 GA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq33 Length=454124 Score = 109 bits (120), Expect = 9e-21 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 |||||||||||||||||||| ||| || || | |||||||||||| || || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || |||||||||||||| || | || | || | || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAGACGC 1893 | ||| || | |||||||||||||||||||||| | | |||||||| || | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1894 GACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCA 1951 || ||| || |||| || | | || |||||||| || |||| ||||||||| Sbjct 403122 GA--ATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq1993 Length=81530 Score = 105 bits (116), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1713 TCACCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCG 1772 || |||||||||||||||||||| ||| || || ||||||||||||| || |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1773 TACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGC 1832 ||||| |||||||||||| | ||| || | | || | || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1833 TTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAGA 1890 ||| ||| || | |||||||||||||||||||||| | | | |||||| || Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1891 CGCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCC 1950 ||| ||| || |||| || | | ||| |||||||| || |||| ||||| || Sbjct 74226 TTCGA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCC 74169 Query 1951 A 1951 | Sbjct 74168 A 74168 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 |||||||||||||| ||||| ||| || || |||||||||||||| | || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || ||||||||| |||| ||| || || | || | || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACGCGA 1895 | ||| || | ||| |||||||||||||||||| | | |||||||| || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1896 CCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCA 1951 ||| || |||| || | | ||| |||||||| || ||| ||||||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq4295 Length=67413 Score = 96.9 bits (106), Expect = 6e-17 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1719 GGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTG 1778 |||||| | ||||||||| ||||||||| |||||||||||| | || || ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1779 CAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGA 1838 |||||| | ||| | | |||||| | | | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1839 TAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA-GA-CGCGAC 1896 ||| | | |||||||| || ||||| ||| | | |||||| | || ||| Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA- 46665 Query 1897 CATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACATCG 1956 ||| || |||| | || | | ||||||||||||| ||| | |||||||| || | Sbjct 46664 -ATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1957 TCTT 1960 |||| Sbjct 46605 TCTT 46602 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 179/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 |||||||||||||| ||||| ||| || || |||||||||||||| || || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || ||| | |||||| | | || || || | || | || | ||||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACG--- 1892 | ||| | ||| | |||||| || |||||||||||| | || || || | ||| Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGT--ACGTTT 2103 Query 1893 -CGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCA 1951 || ||| || |||| ||| | | ||||| ||||||||||| | ||| ||||| Sbjct 2102 TGGA--ATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1952 CATCGTCTTCCCTGTCCTTGA 1972 || |||||| | ||||| Sbjct 2044 TGCTGTTTTCCCTATTCTTGA 2024 >seq5493 Length=32325 Score = 93.3 bits (102), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 1719 GGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTG 1778 |||||||| | ||| || || |||||| | |||||||||||| || || |||||||| Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1779 CAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAG-TGCTTTAGCTTTAG 1837 |||||| ||||||| | ||| | || || | ||||||||| | |||| || || Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---AG 31444 Query 1838 ATAGTGCGGTGCGACGTCATCAATGACGTTATAC 1871 ||| ||||| ||||||||||||| ||| ||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 |||||||||||||| ||||| | | || || | |||||||||||| || || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || ||| | |||||||| || || || | || | || || ||||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATAC 1871 | ||| | ||| | || |||||| |||||||||||| Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATAC 212 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 4e-12 Identities = 87/116 (75%), Gaps = 11/116 (9%) Strand=Plus/Plus Query 1686 TCCAGGTACTCTTTATAG-------CTGGAACCCTCACCAGGATTGCAAAGCACGATTGC 1738 |||| | || |||||||| ||||| |||| |||| ||||||| ||||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCT----AGGAGTGCAAAGTACGATACA 47116 Query 1739 TGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTGCAATTTGACTGCCAGT 1794 ||| || || |||||||||||||| || ||||||||||| |||||||||| ||| Sbjct 47117 TGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1716 CCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTAC 1775 |||||||||||||| ||||| ||| || || ||||||||||||| || || |||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1776 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1835 || ||| | ||| |||| | || || || | || | || | ||||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1836 AGATAGTGCGGTGCGACGTCATCAATGACGTTATAC 1871 | ||| | ||| | ||| || || |||||||||||| Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATAC 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8305692961020