Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001932.1 Length=2815 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq3283 102 1e-18 seq22495 98.7 2e-17 seq4295 91.5 3e-15 seq5745 87.8 3e-14 seq1010 86.0 1e-13 seq35612 80.6 5e-12 seq54129 77.0 6e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 1907 GATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGG 1966 ||||||| || | |||| | ||||| || ||||||||||||||||| || |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1967 TGTTTGATTGCC-AGTCCTCTGGGCCCCCATGAATTCTTTTGA-AGTGCT------TTAG 2018 ||| | |||| | | | ||| || || | ||| || |||| | |||| ||| Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAA--CTGTTGATAATGCTTCTTAATTAA 839 Query 2019 GTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGTTGTAGACCTTAGG 2078 || | ||| ||| ||||| |||||||| |||||||||||||| ||| || | Sbjct 838 ATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGA 779 Query 2079 ACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCACGGGACCA 2132 | | ||||||| ||| || ||| || ||||| || |||| ||| | ||| Sbjct 778 ATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 169/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1900 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCG 1959 || || |||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1960 TACTTGGTGTTTGATTGCC-AGTCCTCTGGGCCCCCATGAATTCTTTTGA-AGTGCT--- 2014 ||||| | || | |||| | | | ||| || || | ||| || |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA--CTGTTGATAATGCTTCT 2166 Query 2015 ---TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGTTGTAGA 2071 ||| || | ||| |||||| || |||||||| |||||||||||||| ||| Sbjct 2165 TAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACG 2106 Query 2072 CCTTAGGACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCACGGGACC 2131 || | | | ||||||| ||| || ||| || ||||| || |||| ||| | || Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 2132 A 2132 | Sbjct 2045 A 2045 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 178/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 1878 GAATTCTTTATAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCC 1937 |||| ||||||| ||| || || |||||||| || | |||| | |||| || | Sbjct 392 GAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCA 333 Query 1938 TTTAATTTGAACTGGCTTACCGTACTTGGTGTTTGATTGCCAG-TCCTCTGGGCCCCCAT 1996 ||||||||||||||| || |||||||| | || | |||||| | | ||| || || | Sbjct 332 TTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTAC 273 Query 1997 GAATTCTTTTGA-AGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTG 2049 ||| || |||| | |||| ||| || | ||| || |||||| |||||||| Sbjct 272 GAA--CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTA 215 Query 2050 TACCATGCATCATTGTTGTAGACCTTAGGACTTAAATCCAGGTGTCCACATAGGTAATTA 2109 |||||||||||||| ||| || | | | ||||||| ||| || ||| || Sbjct 214 TACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTG 155 Query 2110 TGTGGACCCAATGCACG 2126 ||||| || |||| ||| Sbjct 154 TGTGGGCCTAATGAACG 138 >seq4295 Length=67413 Score = 91.5 bits (100), Expect = 3e-15 Identities = 121/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 1905 TGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCGTACTT 1964 ||||||| |||| | ||| || || || |||||||||||| |||| ||||||||||| Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1965 GGTGTTTGATTGCCAGTCCT-CTGGGCCCCCATGAATTCTTTTGAA-GTGCTTTAGGTAG 2022 || ||||| | ||| | | ||||||| | |||| |||||| || | ||| | | Sbjct 46784 GGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAA 46725 Query 2023 TGGGGATCG----ACGTCATCAATGACGTTGTACCATGCATCATT 2063 |||| | |||||||| || |||||||||||||||| ||| Sbjct 46724 ATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATT 46680 >seq5745 Length=45059 Score = 87.8 bits (96), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 1903 CCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCGTAC 1962 || |||||||| | | |||| ||||| || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1963 TTGGTGTTTGATTGCC-AGTCCTCTGGGCCCCCATGAATTCTTTTGA-AGTGCT------ 2014 || | ||||| |||| | | | || || || ||||| || |||| | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAA--CTGTTGATAATGTTTTTTAA 43658 Query 2015 TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATTGTTGTAGACCT 2074 ||| || ||| || ||||||||||||||| |||||||| || || || | Sbjct 43659 TTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 2075 TAGGACTTAAATCCAGGTGTCCACATAGGTAATTATGTGGACCCAATGCACGGGACCA 2132 | | | | ||||||| || || ||||||||||||||||| | ||| | ||| Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 120/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 1903 CCTGGATTGCAGAGGAAGATA-GTGGGAATACCTCCTTTAATTTGAACTGGCTTACCGTA 1961 |||||||||||||| | |||| ||||| | ||| |||||||||||||| | |||||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCT-CTTTAATTTGAACTAGTTTACCGTA 36542 Query 1962 CTTGGTGTTTGATTGCCAGTCCT-CTGGGCCCCCATGAATTCTTTTGAAGTGCTTTAGGT 2020 |||| | ||||||||| | | || ||||| || | ||||| || | ||| | Sbjct 36543 CTTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAATTTTTTTTGCA 36602 Query 2021 AGTGGGGATCG----ACGTCATCAATGACGTTGTACCATGCAT 2059 | | |||||| || ||||| |||| || |||||||||| Sbjct 36603 AAT-AGGATCGAGACACATCATCTATGAAATTATACCATGCAT 36644 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1873 TCCAGGAATTCTTTATAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATA 1932 |||| |||| ||||||| ||| || || |||||||| || | |||| | ||||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1933 CCTCCTTTAATTTGAACTGGCTTACCGTACTTGGTGTTTGATTGCCA 1979 || ||||||||||||||||| || |||||||| | ||| | ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 121/171 (71%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 1900 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTACCG 1959 || || |||||||| || | |||| | ||||| || ||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1960 TACTTGGTGTTTGATTGCCAGTCCT-CTGGGCCCCCATGAATTCTTTTGAAGTGCT---- 2014 ||||| | || | || |||| | ||| || || | ||| | || | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACT-GTTGGTAATGCTTCTT 2142 Query 2015 --TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCATCATT 2063 ||| || | ||| ||| || || |||||||| |||||| ||||||| Sbjct 2141 AATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1873 TCCAGGAATTCTTTATAGCTGGAATTGGGGCCTGGATTGCAGAGGAAGATAGTGGGAATA 1932 |||| ||| ||||||| ||| ||| || |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1933 CCTCCTTTAATTTGAACTGGCTTACCGTACTT 1964 || ||||||||||||||||| || |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8887290190500