Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_001983.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq5745 123 4e-25 seq3439 105 1e-19 seq3283 105 1e-19 seq33 102 1e-18 seq77518 96.9 6e-17 seq1993 87.8 3e-14 seq22495 84.2 4e-13 seq54129 80.6 5e-12 seq953 80.6 5e-12 >seq5745 Length=45059 Score = 123 bits (136), Expect = 4e-25 Identities = 196/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 1762 TCCAAGTACTCTTTATAAGAGGATTTTGGTCC---AGGATTGCATAAAAAGATGGTGGGG 1818 || ||| || |||||||||| | | ||| || ||||||||| | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1819 ATACCACCTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGC 1878 || ||||||||||| ||| || || |||||||| | || || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1879 GCGCCCATGAATTCTTTGAAATGTT------TCAAATAATGGGGATCGACGTCATCAATG 1932 || || ||||| | || |||||| | |||||| ||| || |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1933 ACGTTATACCAAGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGA 1992 ||||||||||| || ||||| || || | || || | ||||| ||| | | Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATA 43747 Query 1993 TAATTGTGAGGACCTAACGCACGTGCCCACATTGTTTTACC 2033 ||||| || ||||| |||| ||||||||| | ||||||||| Sbjct 43748 TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 217/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 1762 TCCAAGTACTCTTTATAAGAGGATTTTGGTCCAGGATTGCATAAAAAGATGGTGGGGATA 1821 || ||| || |||||| || ||| |||||| ||||||| | | ||| | || || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1822 CCACCTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCG 1881 || |||||||| ||| || || |||||||| |||| | ||||| | || || ||| Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1882 CCCATGAATTCTTTGAAATGTTTC------AAATAATGGGGATCGACGTCATCAATGACG 1935 || | ||| | || |||| ||| ||||||| ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1936 TTATACCAAGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGATAA 1995 |||||||| ||||| || || || | || |||| ||||| || | || Sbjct 810 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 751 Query 1996 TTGTGAGGACCTAACGCACGTGCCCACATTGTTTTACCCGTGCGACTATCGCCTTCAATC 2055 ||||| || ||||| | ||| ||||| |||||| || | | ||||||||| Sbjct 750 TTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATA 691 Query 2056 ACAATGCTAATCGGTCTTTCCGG 2078 | |||||| || || | ||| || Sbjct 690 ATAATGCTCATGGGCCGTTCAGG 668 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 217/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 1762 TCCAAGTACTCTTTATAAGAGGATTTTGGTCCAGGATTGCATAAAAAGATGGTGGGGATA 1821 |||||| || |||||| || | |||||||||||||| | | ||| | || || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1822 CCACCTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCG 1881 || |||||||| ||| || ||||||||||| | || | ||||| | || || ||| Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1882 CCCATGAATTCTTTGAAATGTTTC------AAATAATGGGGATCGACGTCATCAATGACG 1935 || | ||| | || |||| ||| ||||||| ||| |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1936 TTATACCAAGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGATAA 1995 |||||||| ||||| || || || | || |||| ||||| || | || Sbjct 2130 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 2071 Query 1996 TTGTGAGGACCTAACGCACGTGCCCACATTGTTTTACCCGTGCGACTATCGCCTTCAATC 2055 ||||| || ||||| | ||| ||||| |||||| || | | ||||||||| Sbjct 2070 TTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATA 2011 Query 2056 ACAATGCTAATCGGTCTTTCCGG 2078 | |||||| || || | ||| || Sbjct 2010 ATAATGCTCATGGGCCGTTCAGG 1988 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 222/332 (67%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 1707 GTAGAATTCCGCATTCTTTGAAGCCCACAATTTGAGTGCTGTATTATCAGCCTCGTCCAA 1766 || |||||| ||||||| | ||| |||| |||| || ||| | | || || Sbjct 403389 GTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAA 403330 Query 1767 GTACTCTTTATAAGAGGATTTTGGTCC--AGGATTGCATAAAAAGATGGTGGGGATACCA 1824 | || |||||||||| | | ||| || ||||||||| | | ||| || || || Sbjct 403329 GAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCG 403270 Query 1825 CCTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCC 1884 | |||||| ||| || || |||||||| | || || ||||||| | || |||| Sbjct 403269 CTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCT 403210 Query 1885 ATGAATTCTTTGAAATGTTTC------AAATAATGGGGATCGACGTCATCAATGACGTTA 1938 | ||| | || |||| || |||||| ||| ||||||||||||||||||| Sbjct 403209 ACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTA 403150 Query 1939 TACCAAGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGATAATTG 1998 ||||| || ||||| || || | | || | ||||| ||| | ||||| Sbjct 403149 TACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTA 403090 Query 1999 TGAGGACCTAACGCACGTGCCCACATTGTTTT 2030 || ||||| |||| ||||||||| | |||||| Sbjct 403089 TGTGGACCCAACGAACGTGCCCAAACTGTTTT 403058 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 190/281 (68%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 1762 TCCAAGTACTCTTTATAAGAGGATTTTGGTCC---AGGATTGCATAAAAAGATGGTGGGG 1818 |||||| | |||||||||| | | ||| || ||||||||| | | ||| || Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1819 ATACCACCTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGC 1878 || || |||||||| ||| | || ||||||| | || || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1879 GCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGGGGATCGACGTCATCAATG 1932 || || | ||| | || |||| || |||||| ||| ||| ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1933 ACGTTATACCAAGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGA 1992 ||||||||||| || ||||| || || | || || | ||||| ||| | | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATA 2194 Query 1993 TAATTGTGAGGACCTAACGCACGTGCCCACATTGTTTTACC 2033 ||||| || ||||| ||| ||||||||| | ||||||||| Sbjct 2193 TAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 168/248 (68%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 1792 CCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAATATGAGTGGGCTTCCCGTAC 1851 ||||||||||| | | ||| || || || ||||||| ||| || || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1852 TTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTC------ 1905 || | || || ||||| | | ||| || | | ||| | || |||| || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1906 AAATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCGTTGGAATAGATCTTA 1965 |||||| ||| |||||||||||||||||||||||| || | ||| || || | || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1966 CTGTTAAGATCCAAGTGGCCGCAAAGATAATTGTGAGGACCTAACGCACGTGCCCACATT 2025 || | ||||| ||| | |||||| || ||||| |||| ||||| ||| | | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 2026 GTTTTACC 2033 |||||||| Sbjct 74163 GTTTTACC 74156 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 146/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 1773 TTTATAAGAGGATTTTGGTCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAAT 1832 |||||| || | | |||||||||||||| | | ||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1833 ATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTC 1892 ||| || || |||||||| | || | ||||||| | || ||||| | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1893 TTTGAAATGTTTC------AAATAATGGGGATCGACGTCATCAATGACGTTATACCAAGC 1946 || |||| ||| ||||||| ||| || |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1947 ATCGTTGGAATAGATCTTACTGTTAAGATCCAA 1979 ||| || || || | || |||| |||||| Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAA 174 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 123/176 (70%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1789 GGTCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAATATGAGTGGGCTTCCCG 1848 |||||||||||||| | | ||| | || || || |||||||| ||| | || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1849 TACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTC--- 1905 ||||| | || | || |||| || ||||| | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1906 ---AAATAATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCGTTGGAATA 1958 ||||||| ||| ||| || || |||||||||||||| |||| || || || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq953 Length=224861 Score = 80.6 bits (88), Expect = 5e-12 Identities = 210/314 (67%), Gaps = 16/314 (5%) Strand=Plus/Plus Query 1773 TTTATAAGAGGATTTTGGTCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAAT 1832 |||||| || | | |||||||||||||| || | ||| | || || || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1833 ATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTC 1892 ||| | | || |||||||| | || ||||| | || || |||| | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1893 TTTGAAATGTT------TCAAATAATGGGGATCGACGTCATCAATGACGTTATACCAAGC 1946 || ||| | | ||||||| ||| |||||| || || ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1947 ATCGTTGGAATAGATCTTACTGTTAAGATCC--AAGTGGCCGCA-AAGATAATTGTGAGG 2003 ||| || || || | || |||| |||| || | | || | || ||||| || Sbjct 2004 ATCATTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGG 2060 Query 2004 ACCTAACGCACGTGCCCACATTGTTTTACCCGTGC--GACTATCGCCTTCAATCACAATG 2061 ||||| | ||| ||||| |||||| || | | || | | ||||||||| | |||| Sbjct 2061 GCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGA-TGT-GCCTTCAATAATAATG 2118 Query 2062 CTAATCGGTCTTTC 2075 || || || | ||| Sbjct 2119 CTCATGGGCCGTTC 2132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8596616001610