Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_002046.1 Length=2642 Score E Sequences producing significant alignments: (Bits) Value seq5745 129 1e-26 seq1993 122 1e-24 seq33 122 1e-24 seq3283 111 3e-21 seq77518 102 1e-18 seq4295 102 1e-18 seq1010 100 5e-18 seq5493 98.7 2e-17 seq3439 98.7 2e-17 seq953 86.0 1e-13 seq22495 82.4 1e-12 seq54129 80.6 4e-12 seq6801 77.0 5e-11 >seq5745 Length=45059 Score = 129 bits (142), Expect = 1e-26 Identities = 188/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 ||||||||||||| |||||| ||| || |||||||||||||||||||| |||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 ||||| |||||||||||||| ||| || || | || | || | || ||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAGACT 1893 || ||| || | || ||||||||||||||||||| | |||||||| || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1894 CGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCAC 1953 ||| ||| || |||| || | | ||||||||||| || |||| ||||||||| Sbjct 43720 CGA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1954 ATCGTCTTCCCTGTTCTTGAA 1974 | || || || |||| ||| Sbjct 43778 ACTGTTTTACCGATTCTAGAA 43798 >seq1993 Length=81530 Score = 122 bits (134), Expect = 1e-24 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 1714 TCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCG 1773 || |||||||||||||||||||| ||| || || |||||||||||||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1774 TA-TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAG 1832 || |||||| ||||||||||||| ||| || | | || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1833 CTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAG 1890 ||| ||| || | |||||||||||||||||||||| | | | |||||| || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1891 ACTCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCC 1950 |||| ||| || |||| || | | ||||||||||| || |||| ||||| | Sbjct 74227 TTTCGA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1951 CACATCGTCTTCCCTGTTCTTGAATCACCTTC 1982 || | || || || |||| ||| ||||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq33 Length=454124 Score = 122 bits (134), Expect = 1e-24 Identities = 173/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 |||||||||||||||||||| ||| || || | ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 |||||| ||||||||||| | || | || | || | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGA--ATAGACT 1893 || ||| || | |||||||||||||||||||||| | | |||||||| || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1894 CGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCA 1952 ||| ||| || |||| || | | |||||||||||| || |||| ||||||||| Sbjct 403123 CGA--ATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 |||||||||||||| ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 |||||| || | |||||||| | || || || | || | || | ||||| | Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCG 1895 || ||| | ||| | |||||| || |||||||||||| | || || || || | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1896 ACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACAT 1955 ||| || |||| ||| | | ||| || ||||||||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1956 CGTCTTCCCTGTTCTTGA 1973 || |||||| ||||||| Sbjct 2041 TGTTTTCCCTATTCTTGA 2024 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 |||||||||||||| ||||| ||| || || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 |||||| |||||||| || | ||| || || | || | || | |||||| | Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCG 1895 || ||| || | ||| |||||||||||||||||| | | |||||||| || | Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTT 2222 Query 1896 ACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACAT 1955 ||| || |||| || | | ||||||||||| || ||| ||||||||| | Sbjct 2221 CAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1956 CGTCTTCCCTGTTCT 1970 || || || |||| Sbjct 2161 TGTTTTACCGATTCT 2147 >seq4295 Length=67413 Score = 102 bits (112), Expect = 1e-18 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 1720 GGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTATTTG 1779 |||||| | ||||||||| ||||||||| |||||||||||| |||| || ||||| ||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1780 CAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGA 1839 |||||| | ||||| | |||||| | | | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1840 TATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA-GA-CTCGAC 1897 || | | |||||||| || ||||| ||| | | |||||| | || |||| Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA- 46665 Query 1898 CATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACATCG 1957 ||| || |||| | || | | ||| |||||||||| ||| | |||||||| || | Sbjct 46664 -ATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1958 TCTTCCCTGTTCTTGAATCACCTTCTACTATGAGACT 1994 |||| |||| | | ||||| ||||||||| Sbjct 46605 TCTTTAAAATTCTAGTTGGGCATTCTAATATGAGACT 46569 >seq1010 Length=204159 Score = 100 bits (110), Expect = 5e-18 Identities = 193/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTAT 1776 || |||||||| |||||||| ||||||| | |||||||||||||| | || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1777 TTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1836 ||| || ||| ||||||| | | ||||| | || |||||||| | ||| | Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTTTTTTGC 36601 Query 1837 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA-GA-CTC 1894 | ||| | | || ||||| |||| |||||| | | ||||| | || || Sbjct 36602 AAATAGGATCGAGACACATCATCTATGAAATTATACCATGCATTAATCGAAAATGATTTC 36661 Query 1895 GACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACA 1954 || ||| || |||| | || | | ||| ||| |||||||||| | |||||||| | Sbjct 36662 GA--ATTAAAATCCATGAAGCCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCCCATA 36719 Query 1955 TCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGAGACT 1994 | |||||||| |||| | ||||||| ||||||||| Sbjct 36720 TTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACT 36759 >seq5493 Length=32325 Score = 98.7 bits (108), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 1720 GGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTATTTG 1779 |||||||| | ||| || || |||||||| ||||||||||||||| || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1780 CAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAG-TGCTTTAGCTTTAG 1838 |||||| ||||| | | ||| | || || | ||||||||| | |||| || || Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---AG 31444 Query 1839 ATATTGCGGTGCGACGTCATCAATGACGTTATAC 1872 |||| ||||| ||||||||||||| ||| ||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 ||| |||||||||| ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 ||||| || | ||||||| | || || || | || | || | ||||| | Sbjct 900 TTTGC-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCG 1895 || ||| | ||| | ||| ||||| |||||||||||| | || || || || | Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1896 ACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACAT 1955 ||| || |||| ||| | | ||| || ||||||||||| | ||| ||||| Sbjct 781 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 722 Query 1956 CGTCTTCCCTGTTCTTGA 1973 || |||||| ||||||| Sbjct 721 TGTTTTCCCTATTCTTGA 704 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 179/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 ||||||||||||| ||||| ||| || || ||||||||||||| || || ||||| Sbjct 1843 CCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTAC 1902 Query 1776 TTTGCAATTTGA-CTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCT 1834 |||||| |||| |||||||| | || | || | || | || | | |||| Sbjct 1903 TTTGCA--TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAA 1960 Query 1835 TTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA--GAC 1892 ||| ||| | ||| | |||||| || || ||||||||| | || || || || Sbjct 1961 TTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTTT 2020 Query 1893 TCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCA 1952 |||| ||| || |||| || | | ||| || ||||||||||| | ||| ||||| Sbjct 2021 TCGA--ATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 Query 1953 CATCGTCTTCCCTGTTCTTGA 1973 || |||||| ||||||| Sbjct 2079 TGCTGTTTTCCCTATTCTTGA 2099 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 |||||||||||||| ||||| | | || || | ||||||||||||||| || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 ||||| ||| | |||||| | || || || | || | || || ||||| | Sbjct 307 TTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATAC 1872 || ||| | ||| | || |||||| |||||||||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATAC 212 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 4e-12 Identities = 174/258 (67%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA- 1775 |||||||||||||| ||||| ||| || || ||||||||||||| ||| || ||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1776 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1835 ||||| ||| | ||| || | | || || || | || | || | ||||| | Sbjct 2197 TTTGC-ATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1836 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCG 1895 || ||| | ||| | ||| || || |||||||||||| || || || || || | Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1896 ACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACAT 1955 ||| || | || ||| | | ||| || ||| ||| ||| | ||| ||||| Sbjct 2078 GGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATGC 2019 Query 1956 CGTCTTCCCTGTTCTTGA 1973 || || ||| ||||||| Sbjct 2018 TGTTTTTCCTATTCTTGA 2001 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 1719 AGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTA-TT 1777 |||| ||||||| ||||| ||| || || ||||||||||||||||| |||||||| || Sbjct 47096 AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTT 47155 Query 1778 TGCAATTTGACTGC 1791 ||| |||||||||| Sbjct 47156 TGC-ATTTGACTGC 47168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8337662525920